PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29929.m004587
Common NameLOC8274294, RCOM_1078530
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 609aa    MW: 66650.5 Da    PI: 5.8447
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29929.m004587genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.31.6e-33140197260
                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                    +DgynWrKYGqK+vkgsefprsYY+Ct+++C+vkkk+ers+ d++++ei+Y+g+Hnh+k
  29929.m004587 140 EDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCQVKKKIERSH-DGQITEIIYKGTHNHPK 197
                    7****************************************.***************85 PP
2WRKY103.61.1e-32347405159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver++++ k+v++tYeg+Hnhe
  29929.m004587 347 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCSVRKHVERASHNLKFVITTYEGKHNHE 405
                    59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-29130198IPR003657WRKY domain
SuperFamilySSF1182901.28E-25139198IPR003657WRKY domain
SMARTSM007746.6E-37139197IPR003657WRKY domain
PROSITE profilePS5081123.468140198IPR003657WRKY domain
PfamPF031067.6E-26140196IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.8E-36332407IPR003657WRKY domain
SuperFamilySSF1182904.32E-28340407IPR003657WRKY domain
PROSITE profilePS5081137.516342407IPR003657WRKY domain
SMARTSM007744.7E-37347406IPR003657WRKY domain
PfamPF031063.8E-25348405IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MLPNCQPSPT TGSFPFPLMN CGSSATPADV ENSSNGGSYT LKPQNGFAAL EAERSNAGDF  60
QEVGSLMEFE FPVEFLKQAI TESYAENSAT DIKVLNSMVT DANLSDVQMD SIPEENVGTC  120
HPEEEEKGRL SATGIARNSE DGYNWRKYGQ KQVKGSEFPR SYYKCTHPNC QVKKKIERSH  180
DGQITEIIYK GTHNHPKPQP SRRAHVGSTS SFDEVPEIDE GNATCFKVEI GSAWKNPQPG  240
SNGGLERTSS ASVVTELSDP LSTTQGKSIG TFESAGTPEL SSTLVSNDDD DDGATQGSIS  300
LGVDADIEES ESKRRKIESC LVETSLSSRA VREPRVVVQI ESEIDILDDG YRWRKYGQKV  360
VKGNPNPRSY YKCTSAGCSV RKHVERASHN LKFVITTYEG KHNHEVPAAK NSNNLSSGGT  420
SLPQVTTNAQ PALTLARNTN RTKPETQMQD YAPGFDRKPV FNNDYSRLSF PGHFSNEMKL  480
GASSIYPLKF PPLQHTMPYS SLEFNRGATH HSSSMAPVVP DFQISLPSSL HTSANLSMPG  540
ADFNYNGRPI SQGQPFLSGQ PFLSGQQLVL PKQEQRDDDH FDAGQATFEH VNGSLSSSVY  600
QRIMGNFPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-34140408878Probable WRKY transcription factor 4
2lex_A5e-34140408878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29929.m004587
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002514852.20.0LOW QUALITY PROTEIN: probable WRKY transcription factor 2
TrEMBLB9RM830.0B9RM83_RICCO; WRKY transcription factor, putative
STRINGXP_002514852.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83493445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-91WRKY DNA-binding protein 2