PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29917.m001986 | ||||||||
Common Name | RCOM_1063820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | MYB | ||||||||
Protein Properties | Length: 162aa MW: 18477.6 Da PI: 4.9907 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26 | 2.2e-08 | 15 | 43 | 1 | 29 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +g+WT eEd++l+++++ +G g W++ a+ 29917.m001986 15 KGPWTMEEDLILINYIANHGEGVWNSLAK 43 79************************997 PP | |||||||
2 | Myb_DNA-binding | 46.2 | 1e-14 | 46 | 82 | 8 | 46 |
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 E++l+ ++++++G++ W++Ia++++ gRt++++k++w++ 29917.m001986 46 EQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 82 999************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-12 | 6 | 44 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.977 | 10 | 88 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.11E-18 | 13 | 80 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-13 | 14 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-7 | 15 | 43 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.44E-11 | 17 | 82 | No hit | No description |
Pfam | PF00249 | 1.2E-13 | 45 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-18 | 45 | 84 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0080086 | Biological Process | stamen filament development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MDKKPINSQD AEVRKGPWTM EEDLILINYI ANHGEGVWNS LAKAAEQLLI MELHAKWGNR 60 WSKIAKHLPG RTDNEIKNYW RTRIQKHIKQ AEACTGSSSS EMNEQGSTSN QISAMMETYS 120 PQSYQGNVQD AFPGANCNLP PEPNDNYWSM EDFWSMQLLN GD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29917.m001986 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034667 | 1e-40 | KM034667.1 Jatropha curcas clone JcMYB047 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015576153.1 | 1e-113 | myb-related protein 305 isoform X2 | ||||
Swissprot | P81391 | 1e-67 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | B9S634 | 1e-118 | B9S634_RICCO; R2r3-myb transcription factor, putative | ||||
STRING | XP_002521453.1 | 1e-119 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3305 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 7e-61 | myb domain protein 21 |
Link Out ? help Back to Top | |
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Phytozome | 29917.m001986 |
Publications ? help Back to Top | |||
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