PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29915.m000479

Common Name

LOC8274942, RCOM_1058010

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

WRKY

Protein Properties

Length: 330aa MW: 37074.1 Da PI: 5.74

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29915.m000479	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	74.4	1.4e-23	128	188	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqK++ +++fpr+Y+rCt++ gC+++k+v++ +edp +tY g+H+++ 29915.m000479 128 DDGHAWRKYGQKVILNTKFPRNYFRCTHKydqGCQATKQVQKIEEDPPKYRTTYYGNHTCK 188 8*************************99999************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-25	120	188	IPR003657	WRKY domain
SuperFamily	SSF118290	9.02E-25	122	188	IPR003657	WRKY domain
PROSITE profile	PS50811	21.218	122	185	IPR003657	WRKY domain
SMART	SM00774	2.3E-36	127	189	IPR003657	WRKY domain
Pfam	PF03106	7.3E-24	128	188	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MDPSSPENLP STQRRAIGEL IRGRELARQL KIVLNSRDDM EEHVPVDDLV MKILNSFTNS 60 LSILNRFDSD IEFPPSTHVG SPCWDSGRKS EDSGESIRST STNKDRRGCY KRRKISNALI 120 RETSDLIDDG HAWRKYGQKV ILNTKFPRNY FRCTHKYDQG CQATKQVQKI EEDPPKYRTT 180 YYGNHTCKNL LKASHHLILE SPDDSSILLS FNTTNDSIIT SKQDSPFLTS FSSSSSIKQE 240 YKDELAHGNS DNDMINIIHN NSIMNNQSSS TDYLLAPDDL SALDHADVIS GVNSSSCTTS 300 THSFDMDMIV SSVGHACFAA DDDDVLPYAF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	6e-24	127	188	8	69	OsWRKY45
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29915.m000479

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002528697.1	0.0	probable WRKY transcription factor 70
TrEMBL	B9SRT4	0.0	B9SRT4_RICCO; WRKY transcription factor, putative
STRING	XP_002528697.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1995	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	3e-44	WRKY DNA-binding protein 70

Link Out ? help Back to Top
Phytozome	29915.m000479
Entrez Gene	8274942