PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29912.m005390
Common NameLOC8265078, RCOM_1047810
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HRT-like
Protein Properties Length: 499aa    MW: 55013 Da    PI: 9.5384
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29912.m005390genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like55.21.2e-17276305130
       HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                    iCG+i++d ++Ck++Pv+g+KRCe HKGmR
  29912.m005390 276 ICGIIMSDAIICKKPPVPGKKRCEVHKGMR 305
                    8***************************** PP
2HRT-like59.26.7e-19340370131
       HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                    +CGv+l+dG++C+++ v+gRKRCeeHKGmRi
  29912.m005390 340 TCGVNLGDGNFCRMEVVPGRKRCEEHKGMRI 370
                    7*****************************7 PP
3HRT-like55.11.3e-17418448131
       HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                    +CG++l++GsvC+rqPv g+KRC++HKG+R+
  29912.m005390 418 VCGATLGNGSVCSRQPVGGNKRCWQHKGKRV 448
                    7*****************************7 PP
4HRT-like61.89.8e-20465495131
       HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                    +CGv+l+ GsvC+r Pv+gRKRCe+HKGmR+
  29912.m005390 465 TCGVALQSGSVCMRAPVQGRKRCEQHKGMRV 495
                    7*****************************7 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MAASENSSVP AAASRLKRED YKRTKHDTHF SKWQILVGPC DWEDYSQGKE GATRYRVHNL  60
PTRSYPGLYE LGIAVSRSGL GREVGKIDPD DIAVVYLGQA DNVRSRLQHY GRSGSHLGAS  120
YATSHWNDSK IESPQKGPGL FEEIFLRGHS IAFRWAPMKD KRKAEETEAQ LLDTFDYAWN  180
RGSNGARRPN DILQKLSKIA SSTNSFSSIS KRLLFIRPSR VGVKIESSKP LSPEKFNFPP  240
DEEGKSFLHG IFKFSRSLPR LVSDKYGTDD QDFIPICGII MSDAIICKKP PVPGKKRCEV  300
HKGMRNYACN PKPIAEGNSH YAPDLHLDSS SNDDQGKNAT CGVNLGDGNF CRMEVVPGRK  360
RCEEHKGMRI NSCASKPIAE EKCHIPSISS VFTSLGPCTI HNTSTSNESS VDEHLSTVCG  420
ATLGNGSVCS RQPVGGNKRC WQHKGKRVQS NSKTSRSLSG FDSLTCGVAL QSGSVCMRAP  480
VQGRKRCEQH KGMRVSTSS
Cis-element ? help Back to Top
SourceLink
PlantRegMap29912.m005390
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002514149.10.0protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLB9RKA50.0B9RKA5_RICCO; Uncharacterized protein
STRINGXP_002514149.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94093139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.11e-123effector of transcription2