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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
29908.m006159 |
| Common Name | LOC8274094, RCOM_1031630 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
| Family |
GRAS |
| Protein Properties |
Length: 491aa MW: 54282.8 Da PI: 5.9844 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 29908.m006159 | genome | JCVI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 332.7 | 6.8e-102 | 102 | 483 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal....ppsetseknsseelaalklfsevsP 89
l++lL+++Aea++ +++ la+ +L rl+el+sp++ ++m+Rlaayft AL+ l ++++++ + + p ++ ++++++++laa++l++++sP
29908.m006159 102 LIHLLMAAAEALTGVNKSreLARVILVRLKELVSPNDgTNMERLAAYFTDALQGLLEGHGTSTKHLIhnsgPYQHHHHHHQADTLAAFQLLQDMSP 197
689**********85554449***********8887669******************977666655521123444444459*************** PP
GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg...skeeleetgerLakfAeelgvpfefnv 180
++kf+h+taNqaIleav++++r+Hi+D+di++G+QW++L+q+L sR++gpp +lRiT++++ ++ s +++etg+rL fA+++g pf+f+
29908.m006159 198 YVKFGHFTANQAILEAVSQDKRIHIVDYDIMEGIQWASLMQSLVSRKDGPPtpHLRITALSRGGNSgkrSIGTVQETGRRLVAFAASIGQPFSFHH 293
***********************************************776556********977777889999*********************** PP
GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleakl 275
++ e++++++L++ +gEal+ n++l+l ++ + ++ ++L+ k+lsP++v++ve+e+ +++ F+ rf+++l++ysal+dslea++
29908.m006159 294 CRLDSDESFRPSALKLVRGEALIMNCMLHLPHFSYRAPDSV---ASFLSGSKTLSPRLVTLVEEEVGPvGDGGFVGRFMDSLYHYSALYDSLEAGF 386
9999****************************985555555...59*******************9988*************************** PP
GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsv 370
p +s++r+ vEr++lg++i + + e+ ++W e+ + aGF+pv++s + +qaklll ++ dgyrvee + lvl Wk+r+L+s+
29908.m006159 387 PMQSRARALVERVFLGPRIAGSLDRIYRG--YGDEEGSSWGEWSSGAGFRPVNISFANHCQAKLLLGLFN-DGYRVEELgCNRLVLSWKSRRLLSA 479
*********************99988877..7778899********************************.******99579999*********** PP
GRAS 371 SaWr 374
S W+
29908.m006159 480 SIWT 483
***6 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 491 aa
Download sequence Send
to blast |
MAMAIDGSFE LDFSGCSTTT TSSTENDHDR ACNWNDWSPL VDWEALSAHH DDFQDLIESM 60
MEDGGLHQNH ETCNSNPNSP SSTDTMAIDE ETSGEDFKGL RLIHLLMAAA EALTGVNKSR 120
ELARVILVRL KELVSPNDGT NMERLAAYFT DALQGLLEGH GTSTKHLIHN SGPYQHHHHH 180
HQADTLAAFQ LLQDMSPYVK FGHFTANQAI LEAVSQDKRI HIVDYDIMEG IQWASLMQSL 240
VSRKDGPPTP HLRITALSRG GNSGKRSIGT VQETGRRLVA FAASIGQPFS FHHCRLDSDE 300
SFRPSALKLV RGEALIMNCM LHLPHFSYRA PDSVASFLSG SKTLSPRLVT LVEEEVGPVG 360
DGGFVGRFMD SLYHYSALYD SLEAGFPMQS RARALVERVF LGPRIAGSLD RIYRGYGDEE 420
GSSWGEWSSG AGFRPVNISF ANHCQAKLLL GLFNDGYRVE ELGCNRLVLS WKSRRLLSAS 480
IWTSPSSDCD L
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}. |
