PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29908.m006047

Common Name

LOC8281661, RCOM_1036390

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

C2H2

Protein Properties

Length: 285aa MW: 31978.5 Da PI: 9.0315

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29908.m006047	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5e-06	124	143	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 y+C+ C k+F+r nL+ H+ 29908.m006047 124 YSCHVCFKTFNRYNNLQMHM 143 99*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.11E-5	117	146	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-4	124	143	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.242	124	151	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	126	146	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.54E-5	190	228	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009813	Biological Process	flavonoid biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MEFSDVVFNP STPLVSSSSS STSNKKHTIG IEPLDLFPST SYSSLEPMPL LSSLISSEEQ 60 AFSSENPKES IDRDKEDVTV ALHIGLPDYS QISVSSSTKG NTNVAAKQYW IPTPEQILIG 120 FTHYSCHVCF KTFNRYNNLQ MHMWGHGSQY RRGPESLKGT QPRAMLGIPC YCCAEGCKNN 180 IQHPKAKPLK DFRTLQTHYK RKHGLKPFMC RKCGKFLAVK GDWRTHEKNC GKRWLCICGS 240 DFKHKRSLKD HIKAFGSTCH GPFLPIPPSS SFDGFGLFDS TFALV

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29908.m006047

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002513936.1	0.0	protein TRANSPARENT TESTA 1
Swissprot	Q8VWG3	1e-110	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	B9RJL7	0.0	B9RJL7_RICCO; TRANSPARENT TESTA 1 protein, putative
STRING	XP_002513936.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-109	C2H2 family protein

Link Out ? help Back to Top
Phytozome	29908.m006047
Entrez Gene	8281661

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]