PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29908.m005962
Common NameLOC8263003, RCOM_1033270
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bZIP
Protein Properties Length: 361aa    MW: 40689.8 Da    PI: 7.0814
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29908.m005962genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.93.4e-1175111339
                    XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 
                     +k +rr+++NReAAr+sR+RKka++++Le    +L 
  29908.m005962  75 TDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLV 111
                    6899**************************8655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.2E-767120No hitNo description
SMARTSM003381.2E-773155IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.93375117IPR004827Basic-leucine zipper domain
PfamPF001704.3E-876114IPR004827Basic-leucine zipper domain
CDDcd147084.79E-2177129No hitNo description
SuperFamilySSF579593.78E-777116No hitNo description
PROSITE patternPS0003608095IPR004827Basic-leucine zipper domain
PfamPF141441.3E-29164239IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MTSSSTQLSA LRGMGIYEPF HQISSWGDTF RGDGSLNVGS STIVPVDTGI NDKTEYVSQD  60
SMEHSRSDQE SNRPTDKIQR RLAQNREAAR KSRLRKKAYV QQLESSRLKL VQLEQELDRA  120
RQQGIYISTT AVSGHLGLPG TLNSGITTFE MEYAHWLEEE HKYVSELRTA LQAHITDIEL  180
RILVENGLNH YNNLFRMKAD AAKADVFYLI SGKWRTSVER FFQWIGGFRP SELLNVLMSQ  240
LEPLTDQQLV DVCNLRQSCQ QAEDALSQGI DKLQQTLAQS IAEDIANAGS YRAQMAAAIG  300
NLEALEGFVN QADHLRQQTL QHLSRILTTR QAARGLLALG EYFHRLRALS SLWAARPREP  360
A
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00247DAPTransfer from AT1G77920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29908.m005962
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513852.10.0transcription factor TGA7
RefseqXP_015571562.10.0transcription factor TGA7
SwissprotQ93ZE21e-169TGA7_ARATH; Transcription factor TGA7
TrEMBLB9RJD30.0B9RJD3_RICCO; Transcription factor TGA7, putative
STRINGXP_002513852.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109634104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77920.11e-172bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]