PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29889.m003278
Common NameRCOM_1000260
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bZIP
Protein Properties Length: 165aa    MW: 19159.4 Da    PI: 10.3211
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29889.m003278genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_128.43.5e-092359541
                   CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41
                   k+ +r+++NRe+ArrsR +K++ +e L  + +eLe +
  29889.m003278 23 KKRKRMISNRESARRSRMKKQKHMEDLISEKAELERK 59
                   899************************9999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.5E-81983IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.0132159IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.8E-621104No hitNo description
SuperFamilySSF579596.67E-92377No hitNo description
PfamPF001703.8E-72359IPR004827Basic-leucine zipper domain
CDDcd147021.99E-152474No hitNo description
PROSITE patternPS0003602641IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006521Biological Processregulation of cellular amino acid metabolic process
GO:0009267Biological Processcellular response to starvation
GO:0009617Biological Processresponse to bacterium
GO:0009651Biological Processresponse to salt stress
GO:0009901Biological Processanther dehiscence
GO:0010182Biological Processsugar mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MSCFINISSG SDVDAPKVMI DEKKRKRMIS NRESARRSRM KKQKHMEDLI SEKAELERKL  60
HEDNQKCKAI LQAHLVLESE NKVLRAKKME LIQHLNCLHQ ILESYKKSEV FGFTHVFVIL  120
IMGGNVGSNF SKLRRPKPQG ERIKAYTWLI HFISRQEVPD SEGIA
Cis-element ? help Back to Top
SourceLink
PlantRegMap29889.m003278
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015574672.16e-72basic leucine zipper 1
TrEMBLB9RZN81e-118B9RZN8_RICCO; Ocs element-binding factor, putative
STRINGXP_002519207.11e-119(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15536812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49450.12e-22basic leucine-zipper 1