PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29889.m003255
Common NameLOC8258774, RCOM_0999630
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family FAR1
Protein Properties Length: 749aa    MW: 85735.4 Da    PI: 6.3298
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29889.m003255genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.57e-2159152190
           FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                    +fY+++Ak++GFs+r+++++ +    + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+      +w+vt +++ HnHel 
  29889.m003255  59 EFYCSFAKQCGFSIRRHRTRGKdGIGRGVTRRDFTCHRGGFPQMKPSEDGKMQRNRKSSRCGCQAYMRIVKRAdfdVPEWRVTGFSNIHNHELL 152
                    6***************999877456677********************9*******************98887676789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.0E-1859152IPR004330FAR1 DNA binding domain
PfamPF105515.1E-24275367IPR018289MULE transposase domain
PROSITE profilePS509669.668539587IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-7561584IPR007527Zinc finger, SWIM-type
SMARTSM005757.3E-7562589IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MSEGTSMVME SSENGTDISQ DDTGNVEEIP EDTILSRQTS VNLVPFIGQR FVSQDAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGIGRGVTRR DFTCHRGGFP QMKPSEDGKM QRNRKSSRCG  120
CQAYMRIVKR ADFDVPEWRV TGFSNIHNHE LLKSNEVHLL PAYCTMSPDD KTRICMFAKA  180
GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLQSFRNIN RDNDAIDLIA MCKKLKDEDH  240
NFKYDFKIDG NNRLEHIAWS YASSIQLYEA FGDAVVFDTT HRLDAYDMIL GIWLGLDNHG  300
MTCFFGCVLL RDENMQSFSW ALKAFMDFMN GKAPHTIMTD QNMWLKEAIA IEIPETKHAF  360
CIWHILAKFS DWFSLLLESC YDDWKAEFLR LYNLEFVEDF EEGWKEMVDK YGLHANKHIA  420
SLYALRTFWA LSYLRHYFFA GMMNTCQSES INAFIQRFLS AQSQLERFIE RVADIVDLNN  480
HSGSKAETHR KLQKVYLKTG SPIESHAASI LTPYAFNKLQ EELVLAPQYA SFQIDDYGYQ  540
VRHHTQISGG CKVIWDPCQE HISCSCSRFE FLGILCRHVL RVLSNNNCFH IPDQYMPARW  600
RDVDLSSTAR TQSDRIQLLE SMASTLVTEA VETEERLNVA CEEIAMVLSR IKDLPRQTHD  660
ENAYNCASDS LILPDVEDAD GVVQTLAIGN PHDSISLGKL KERRPRDGTD ISRKRRHCSG  720
PCCGQFGHDV SDCPIMGSDH LNGAALGYI
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29889.m003255
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002519184.10.0protein FAR1-RELATED SEQUENCE 11
RefseqXP_015574764.10.0protein FAR1-RELATED SEQUENCE 11
RefseqXP_015574765.10.0protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLB9RZL50.0B9RZL5_RICCO; Uncharacterized protein
STRINGXP_002519184.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]