PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29851.m002375

Common Name

LOC8278552, RCOM_0935180

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

Dof

Protein Properties

Length: 307aa MW: 34021 Da PI: 9.4161

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29851.m002375	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.4	5e-36	44	101	2	59
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 +++ lkcprCds ntkfCyynny+ sqPr+fCk+C+r+WtkGG+lrnvPvGggr++++ 29851.m002375 44 QSEPLKCPRCDSINTKFCYYNNYNKSQPRHFCKSCKRHWTKGGTLRNVPVGGGRKNKR 101 57889***********************************************976665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-23	45	101	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.1E-32	47	100	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.438	48	102	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	50	86	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MGLSSKQVSS DGLDWSKTLL QQAQTLELPK PATGRRQQQQ NQQQSEPLKC PRCDSINTKF 60 CYYNNYNKSQ PRHFCKSCKR HWTKGGTLRN VPVGGGRKNK RLKTSKTTAK TAATTTTCTT 120 STSNISGKIL NTVNPQMVIQ AQKQKQNLPL GLGDQKSTSE IMRQSLISQP SSVLQQNSIS 180 CSNFVSKSFN TGNNGIFLGT TLSLPQNQEL NFPYLNSSSF DTNPSSISNS FQASNVYNYS 240 TGETMDDSVI TTVMPTASSC ITHHQLWQVP NASRGMDITS YWNWDDIDNL VSGSDLNLPW 300 DDPELKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29851.m002375

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002519023.1	0.0	dof zinc finger protein DOF1.4
TrEMBL	B9RZ54	0.0	B9RZ54_RICCO; Zinc finger protein, putative
STRING	XP_002519023.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5107	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	2e-29	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	29851.m002375
Entrez Gene	8278552