PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29848.m004464 | ||||||||
Common Name | LOC8265193, RCOM_0919270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | WRKY | ||||||||
Protein Properties | Length: 321aa MW: 34605.1 Da PI: 10.0085 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.7 | 1.8e-31 | 245 | 302 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+++dp+++++tYegeH+h+ 29848.m004464 245 DEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERATDDPTMLIVTYEGEHRHT 302 9************************9888****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 3.9E-19 | 196 | 241 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 3.4E-32 | 231 | 303 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.687 | 238 | 304 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-26 | 241 | 302 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-36 | 243 | 303 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.5E-27 | 245 | 301 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MAVELMSFAK MEDQMAIQEA ASQGLKSMEH LIRLMSHKSN HVDCTDLTDL TVSKFRKVIS 60 LLNRTGHARF RRGPVQSSSC LSSAPAPSAS QSINLNTTRI AAPPAPAPGV HPVTAPAASF 120 VQQPQSVTLD FTKPNIFSSN GKSSELEFSV SSSSSFMSSA ITGDGSVSNG KQGSSIFLAP 180 AVSGGKPPLS SAPYNKKRCH EHDHSEDVSG SASGKCHCSK RRKNRVKKTI RVPAISSKIA 240 DIPPDEYSWR KYGQKPIKGS PYPRGYYKCS TVRGCPARKH VERATDDPTM LIVTYEGEHR 300 HTQAAMQDNL SGGIGLVFES T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-21 | 231 | 301 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00464 | DAP | Transfer from AT4G31550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29848.m004464 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002515353.1 | 0.0 | probable WRKY transcription factor 11 | ||||
Swissprot | Q9SV15 | 1e-143 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | B9RNN4 | 0.0 | B9RNN4_RICCO; WRKY transcription factor, putative | ||||
STRING | XP_002515353.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1314 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 1e-128 | WRKY DNA-binding protein 11 |
Link Out ? help Back to Top | |
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Phytozome | 29848.m004464 |
Entrez Gene | 8265193 |