PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29846.m000184
Common NameLOC8268281, RCOM_0915890
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 584aa    MW: 64349.2 Da    PI: 7.9158
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29846.m000184genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.6e-1676122148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEde l +av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
    29846.m000184  76 KGGWTLEEDETLRNAVAAFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 122
                      688*****************************.************986 PP
2Myb_DNA-binding59.66.8e-19128174148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+++ ++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
    29846.m000184 128 KGPWTQEEDDKITELVAKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 174
                      79******************************.*************97 PP
3Myb_DNA-binding54.62.4e-17180223146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT eE+  l +a++ +G++ W+ Ia+ ++ gRt++++k++w++
    29846.m000184 180 KDAWTLEEEMALMNAHRIHGNK-WAEIAKVLP-GRTDNSIKNHWNS 223
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.81671122IPR017930Myb domain
SMARTSM007178.1E-1475124IPR001005SANT/Myb domain
PfamPF002491.5E-1476122IPR001005SANT/Myb domain
SuperFamilySSF466895.46E-1577132IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-1878132IPR009057Homeodomain-like
CDDcd001673.19E-1279122No hitNo description
PROSITE profilePS5129431.539123178IPR017930Myb domain
SuperFamilySSF466891.32E-31125221IPR009057Homeodomain-like
SMARTSM007176.3E-18127176IPR001005SANT/Myb domain
PfamPF002494.3E-18128174IPR001005SANT/Myb domain
CDDcd001679.04E-16130174No hitNo description
Gene3DG3DSA:1.10.10.608.1E-28133181IPR009057Homeodomain-like
PROSITE profilePS5129422.065179229IPR017930Myb domain
SMARTSM007171.4E-16179227IPR001005SANT/Myb domain
PfamPF002491.5E-15180223IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-23182229IPR009057Homeodomain-like
CDDcd001677.98E-13182225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MSSTAIPATS LQEEEEEMDE AKIEECCLEN KQLTAASSSS LSEGSGSATL KSPGVSSPAT  60
ASPTHRRTTG PIRRAKGGWT LEEDETLRNA VAAFKGKSWK KIAEFFPDRS EVQCLHRWQK  120
VLNPDLVKGP WTQEEDDKIT ELVAKYGPTK WSVIAKSLPG RIGKQCRERW HNHLNPDIKK  180
DAWTLEEEMA LMNAHRIHGN KWAEIAKVLP GRTDNSIKNH WNSSLKKKLD FYLATGKLPP  240
VAKSDIVFSS RKLPSVAKNG SQDGIKDINN KHSVFKMYKE SDSTAQTSSG TTDVCKLEED  300
SKNQLESSLL VRDLATSSSF LPNESADSEG VECKPNSFTA DLSCCNSEPL RKCESCGINN  360
EIGEGKFIGS QLHFGTSSYG SLYYEPPQLG ICTPIHVDPL IVHHVQHEYC SSPIASPISF  420
FTPPCVKNSD LSSQSPESIL RIAAKSFPNT PSIFRKRKVG SQVHMLQSKS SKVSQEPVEG  480
RLQVSNGQGR TEYTSEKTES QDGSLSHSPC RDNSTIRPND KAFNASPPYR LKSKRTAVFK  540
SVERQLEFTF DRDRCDSAKS VGLSANGSSI VTEDCSHAAK MGIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-68752295159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-68752295159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29846.m000184
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5673440.0AJ567344.1 Populus tremula x Populus tremuloides mRNA for MYB transcription factor R3 type (myb gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002532327.10.0transcription factor MYB3R-3 isoform X1
SwissprotQ6R0321e-175MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLB9T2580.0B9T258_RICCO; Myb3r3, putative
STRINGXP_002532327.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66163449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-165myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]