PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29842.m003700
Common NameLOC8267429, RCOM_0906780
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 207aa    MW: 23844.4 Da    PI: 5.0713
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29842.m003700genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.47.3e-104385855
                   HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   +ErrRR+++ +++  Lr  +P       + ++Ka+i e A+ YI++Lq
  29842.m003700 43 AERRRRKKLSERLLALRASVPII-----TNMNKATIIEDAITYIQELQ 85
                   7*********************6.....58*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-1532100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.71E-103489No hitNo description
PROSITE profilePS5088813.9993584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-104190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-1443101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-74385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MEFVVPAMDD LCIAQEGGRR GRLGQRTVDY DDTKEYKSKN LGAERRRRKK LSERLLALRA  60
SVPIITNMNK ATIIEDAITY IQELQKHVKH LSDQLLEMDE LSEEAVKTRS DEFDPAEEMK  120
QCGIMEDVQV TYVDETKLWI KIILEKKRGR FTRLIEALSY LGLELTETTV TTYRGAMLVS  180
SFVEGAYGDT LTVQQTKEYL LEIIRTI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14350ERRRRKKL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29842.m003700
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002518587.11e-150transcription factor DYT1
TrEMBLB9RXW81e-148B9RXW8_RICCO; DNA binding protein, putative
STRINGXP_002518587.11e-149(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.12e-34bHLH family protein