PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29842.m003572
Common NameRCOM_0903890
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family G2-like
Protein Properties Length: 309aa    MW: 35272.2 Da    PI: 9.3369
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29842.m003572genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.21.8e-3367120255
        G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    prlrWtp+LH++Fv+ave+LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR+
  29842.m003572  67 PRLRWTPDLHQCFVHAVERLGGEDRATPKMVLQIMNVKGLTISHVKSHLQMYRS 120
                    8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-3263122IPR009057Homeodomain-like
PROSITE profilePS5129412.47263123IPR017930Myb domain
SuperFamilySSF466898.6E-1666121IPR009057Homeodomain-like
TIGRFAMsTIGR015574.6E-2567121IPR006447Myb domain, plants
PfamPF002491.5E-868119IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MKRVGVDAVV ESSLKGSPSS PLENLDYALQ SCDDHIRVIR RRLDHKLSPE LTLKSPMVRP  60
YVRSKLPRLR WTPDLHQCFV HAVERLGGED RATPKMVLQI MNVKGLTISH VKSHLQMYRS  120
MKHEQMIQEA AMAAKKKNDK ALGIHQPNFF SHLNSMRCHQ FKTEDDSNNA LLNQGCRADN  180
PIYKLASENT SMSTQRIEKQ EIWNIGKKVS DESFSHEEVT SQEWEQKPDP SIIFKDLLKS  240
SSTAQETHEQ EKVWRVDGVG RNRNDKSLVE GDKVSLSLKS KASSEWSLLK LRKADSIYLN  300
DVSLELTLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-1968123459Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-1968123459Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-1968123358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-1968123358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-1968123358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-1968123358Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-1968123459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-1968123459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-1968123459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-1968123459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-1968123459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-1968123459Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29842.m003572
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002518461.20.0putative Myb family transcription factor At1g14600
TrEMBLB9RXJ20.0B9RXJ2_RICCO; DNA binding protein, putative
STRINGXP_002518461.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93812840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.16e-33G2-like family protein