PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29842.m003555 | ||||||||
Common Name | LOC8277992, RCOM_0903720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | WRKY | ||||||||
Protein Properties | Length: 580aa MW: 63095.8 Da PI: 6.3671 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.3 | 4.8e-31 | 335 | 393 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+ 29842.m003555 335 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDTSILITTYEGNHNHP 393 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-33 | 319 | 395 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.28E-28 | 327 | 395 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.735 | 329 | 395 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.6E-38 | 334 | 394 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-26 | 336 | 393 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 580 aa Download sequence Send to blast |
MDKGWGLTLD SDHPVFSFFP NSATANKPAD SFLKINKRNS FDASDPVRMF PFSVNLPSPA 60 DDNRLIVGEV DFFSEKKNNV VSDNHHSDDS KTTTISVKKE NSYADIAPKS NDVNTGLHLL 120 TANTGSDQST VDDGASSEVD DKRSKFELAQ LQIDLQRMNN ENQRLRDMLT QVTNNYNALQ 180 MHLVALMQQQ QQQNHGPEAT HEHEVVQGKS EEKKHEVVPR QFLDLGPSAE TDEISHSSSD 240 DERTRSGTPQ TNTETASVKN NGKIEMSTFD QENSSFRDGK GIGREESPES ETQGWNPNKV 300 QKLNPASKGI DQNAEATMRK ARVSVRARSE APMITDGCQW RKYGQKMAKG NPCPRAYYRC 360 TMAVGCPVRK QVQRCAEDTS ILITTYEGNH NHPLPPAAMA MASTTTAAAS MLLSGSMSSA 420 DGIMNPNLLA RAILPCSSSM ATISASAPFP TVTLDLTHSP NPLQVQRPPT HFQVPFPGQP 480 QNFASVTPQQ LPQVFGQALY NQSKFSGLQL SQELPQSQQL HPSQQHSLVD SVSAATAAIT 540 ADPNFTAALA AAITSIIGGG NGNTSTTHNN SNGNNTSSRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-22 | 321 | 397 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29842.m003555 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002518444.1 | 0.0 | probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-168 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | B9RXH5 | 0.0 | B9RXH5_RICCO; WRKY transcription factor, putative | ||||
STRING | XP_002518444.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22070.1 | 1e-143 | WRKY DNA-binding protein 31 |
Link Out ? help Back to Top | |
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Phytozome | 29842.m003555 |
Entrez Gene | 8277992 |