PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29827.m002675 | ||||||||
Common Name | RCOM_0868230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | G2-like | ||||||||
Protein Properties | Length: 260aa MW: 29401.1 Da PI: 9.6744 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.2 | 1.9e-33 | 25 | 79 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl 29827.m002675 25 KPRLRWTPDLHHRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 79 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-32 | 22 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.7 | 22 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-16 | 25 | 82 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-24 | 25 | 80 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.1E-9 | 27 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.5E-22 | 128 | 174 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MERAAAAFGG TYGYENGVVM TRDPKPRLRW TPDLHHRFVD AVTKLGGPDK ATPKSVLRLM 60 GLKGLTLYHL KSHLQKYRLG QQQARKQNTK EQYKENSGAS YVNFSNHSSS SGLHATSSSN 120 HNQQGEIPIA EALKSQIEVH TRFKEQLEVQ KKLQVRIEAQ GKYLQDLLEK AQKSFSSLDM 180 KGSCNLDLAL IKNTNAEERK ENLKDIFAEP NYSVFHVSRE AEMQKINDFE HKIEGSIHLD 240 LNTKGSYDFA AVNGSQLELR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-20 | 25 | 78 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-20 | 25 | 78 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-20 | 25 | 78 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-20 | 25 | 78 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00544 | DAP | Transfer from AT5G45580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29827.m002675 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015575053.1 | 0.0 | myb family transcription factor PHL11 | ||||
Swissprot | C0SVS4 | 3e-80 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | B9S1U3 | 0.0 | B9S1U3_RICCO; Transcription factor, putative | ||||
STRING | XP_002519958.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5101 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 2e-70 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | 29827.m002675 |
Publications ? help Back to Top | |||
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