PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29814.m000736
Common NameLOC8265376, RCOM_0838620
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 264aa    MW: 28589.6 Da    PI: 5.2699
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29814.m000736genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.19.6e-191661147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+++Ed  l+++v+q+G+++W++I+  ++ gR++k+c++rw + 
    29814.m000736 16 KGSWSPQEDANLIKLVEQHGPRNWSLISTGIP-GRSGKSCRLRWCNQ 61
                     799*****************************.***********985 PP
2Myb_DNA-binding55.61.3e-1770112347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T++Ed  +v+a++ +G++ W+tIar ++ gRt++ +k++w++ 
    29814.m000736  70 PFTPDEDAVIVQAHAVHGNK-WATIARLLP-GRTDNAIKNHWNST 112
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.261166IPR017930Myb domain
SuperFamilySSF466891.83E-3014109IPR009057Homeodomain-like
SMARTSM007173.1E-161564IPR001005SANT/Myb domain
PfamPF002492.0E-181661IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-251769IPR009057Homeodomain-like
CDDcd001678.25E-151860No hitNo description
SMARTSM007173.1E-1467115IPR001005SANT/Myb domain
PROSITE profilePS5129422.32767117IPR017930Myb domain
CDDcd001671.56E-1170113No hitNo description
PfamPF002491.8E-1470112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2370116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGSFSGGGRS SSERIKGSWS PQEDANLIKL VEQHGPRNWS LISTGIPGRS GKSCRLRWCN  60
QLSPEVQHRP FTPDEDAVIV QAHAVHGNKW ATIARLLPGR TDNAIKNHWN STLRRKRIAE  120
FSSASSESNS AIKRLSLDGD SESDSESGSD SAAAAKRQCL GGSGCTEDSS FNGGDAKVVE  180
PETLLTLSPP GDGFVTAAAA IGEKTEEEEE EVEVVKGGGD NGRLVREEEE SCLLTIMRKM  240
IAVEVRNYVD RLRAQDGPRN EKDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-40131161104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29814.m000736
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528315.10.0transcription factor MYB73
SwissprotO231606e-55MYB73_ARATH; Transcription factor MYB73
TrEMBLB9SQP60.0B9SQP6_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002528315.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116002935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.13e-51myb domain protein 77
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]