PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29813.m001457

Common Name

LOC8260604, RCOM_0835810

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

TCP

Protein Properties

Length: 420aa MW: 45511.2 Da PI: 8.3301

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29813.m001457	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.7	1.2e-39	63	168	2	105
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa. 95 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++ + s +ss+s+ s++++ +++ 29813.m001457 63 PPKRTSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRSSGSSISASHHLRNTYf 158 789******************************************************************999867777777774444444444433 PP TCP 96 kskksqksaa 105 ++++ +++++ 29813.m001457 159 NPNFVSHQQH 168 4444444333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.6E-38	67	177	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.164	69	123	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MIMEPENGIR TRPNFPLQLL EKKQEQEQEQ QQHQQQLPDH HLLQQQQQQQ QLISSSSSSK 60 KPPPKRTSTK DRHTKVEGRG RRIRMPATCA ARVFQLTREL GHKSDGETIE WLLQQAEPSV 120 IAATGTGTIP ANFTSLNISL RSSGSSISAS HHLRNTYFNP NFVSHQQHLR NRTDWERSII 180 IDEATSQHQR RILFPDDSLS FSSISSSNNN AGGTLNTGAG VVLQGAATTS ADVSKQEVRD 240 TSTCLQVPHG DVETSIGRKR RSEHELLSQS HYHQMGSYLL QSTSSGTIPT THSPTPATFW 300 MVTNPNSNQV ISGDPVVTFP SFSASTNSMY RGSMSSGLRF MNFPTPMALL PSQQLDSPTS 360 GGGGGGGAGS GGSSIVTDSH LGMLAAFNAY RPILGSGAPE SPASGSNPHH GGKDEHDTTS

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MIMEPENGIR TRPNFPLQLL EKKQEQEQEQ QQHQQQLPDH HLLQQQQQQQ QLISSSSSSK  60
KPPPKRTSTK DRHTKVEGRG RRIRMPATCA ARVFQLTREL GHKSDGETIE WLLQQAEPSV  120
IAATGTGTIP ANFTSLNISL RSSGSSISAS HHLRNTYFNP NFVSHQQHLR NRTDWERSII  180
IDEATSQHQR RILFPDDSLS FSSISSSNNN AGGTLNTGAG VVLQGAATTS ADVSKQEVRD  240
TSTCLQVPHG DVETSIGRKR RSEHELLSQS HYHQMGSYLL QSTSSGTIPT THSPTPATFW  300
MVTNPNSNQV ISGDPVVTFP SFSASTNSMY RGSMSSGLRF MNFPTPMALL PSQQLDSPTS  360
GGGGGGGAGS GGSSIVTDSH LGMLAAFNAY RPILGSGAPE SPASGSNPHH GGKDEHDTTS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29813.m001457

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002522405.1	0.0	transcription factor TCP14
TrEMBL	B9S8T6	0.0	B9S8T6_RICCO; Uncharacterized protein
STRING	XP_002522405.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2120	32	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	1e-40	TCP family protein

Link Out ? help Back to Top
Phytozome	29813.m001457
Entrez Gene	8260604