PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29805.m001499
Common NameLOC8283836, RCOM_0819850
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 363aa    MW: 41194 Da    PI: 4.8211
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29805.m001499genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.3e-0690113226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    k  lC ff + G+C  G +CkF+H+
  29805.m001499  90 KSILCEFFKA-GQCAKGFKCKFSHD 113
                    6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.15988115IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-488114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-688113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-490114IPR000571Zinc finger, CCCH-type
SMARTSM003564.5158195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.953158196IPR000571Zinc finger, CCCH-type
PfamPF165439.7E-19215295IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MPPKQQSKAD IAKKQKIVED KTFGLKNKNK SKNVQKYVQN LKQSVQPKPD SSKTAAKKKK  60
EEEKAKEKEL NDLFKVAVSQ PKVPIGVDPK SILCEFFKAG QCAKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DQETMEDWDQ ETLEKVVESK KTEYNQNKPT DIVCKYFLEA VEKKQYGWFW  180
VCPNGGKDCH YRHALPPGYV LKSQMKALLE EEADKIPIEE EIENQRAKLT ASTPMTPELF  240
MQWKNKKIEE RDAGLAAQRA ERAKNDRMSG RELFLSDASL FVDDAEAYEE YQREEQSDGP  300
EQKANVSSST DGPSTSAASV VDDEDPHGGE EDDDDELDLD ELNELEASLA KTSIQIQEPG  360
GDN
Cis-element ? help Back to Top
SourceLink
PlantRegMap29805.m001499
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525195.10.0zinc finger CCCH domain-containing protein 11
SwissprotQ0JHZ20.0C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLB9SGS60.0B9SGS6_RICCO; Zinc finger protein, putative
STRINGXP_002525195.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44191113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-162C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]