PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29805.m001494
Common NameLOC8283831, RCOM_0819800
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family AP2
Protein Properties Length: 467aa    MW: 51788.2 Da    PI: 6.2788
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29805.m001494genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.1e-17132181155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  29805.m001494 132 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 181
                    78*******************......55************************997 PP
2AP2445.6e-14224274155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  29805.m001494 224 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDTEIEAARAYDKAAIKCNG 274
                    89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-16132191IPR016177DNA-binding domain
PfamPF008473.0E-9132181IPR001471AP2/ERF domain
CDDcd000182.81E-11133191No hitNo description
Gene3DG3DSA:3.30.730.104.6E-17133190IPR001471AP2/ERF domain
SMARTSM003804.4E-32133195IPR001471AP2/ERF domain
PROSITE profilePS5103217.556133189IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-17224283IPR016177DNA-binding domain
CDDcd000186.28E-26224284No hitNo description
PfamPF008471.8E-9224274IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-16225282IPR001471AP2/ERF domain
PROSITE profilePS5103215.725225282IPR001471AP2/ERF domain
SMARTSM003803.7E-32225288IPR001471AP2/ERF domain
PRINTSPR003674.9E-6226237IPR001471AP2/ERF domain
PRINTSPR003674.9E-6264284IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MLDLNLSFLS PGSTSPSPPG LDNNKLLEVS MASSGSLNSS SIVNAGDDDD DSNAVEPFSY  60
SFSILTNHPH HDDDDDDNSG DRTIQLFPVD GHSIKTQWLN LRSREVEYGA GGPPLAQRPV  120
KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR  180
GIEADINFNV SDYDEDIKQM SNFTKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR  240
MGQFLGKKYI YLGLFDTEIE AARAYDKAAI KCNGREAVTN FEPSTYEGEI MSEVNNADGN  300
QNLDLNLGIA PPDTSGTQKI NIETSGFPYQ SSWDGRPNDR GQMILSSGSA TLKDELPYDP  360
SMPFEHPPLW GGLHSNFFPI YKERAMEKRM EVDSWPNWTW QAQGPCGGAN PLPFFSTAAS  420
SGFGSSTITA PSAAAGQLQF PNSAILHHHF SPSITNPSNV SHFYYKS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29805.m001494
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525190.20.0LOW QUALITY PROTEIN: floral homeotic protein APETALA 2
SwissprotB8AMA91e-111AP22_ORYSI; APETALA2-like protein 2
TrEMBLB9SGS10.0B9SGS1_RICCO; Floral homeotic protein APETALA2, putative
STRINGXP_002525190.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-102related to AP2.7