PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29801.m003201
Common NameLOC8275319, RCOM_0813730
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 470aa    MW: 53156.9 Da    PI: 5.7945
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29801.m003201genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.6e-16114203198
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    f k l++s+v    ++ lp +f++ h ++k +++ +++e+e+g+++++++i ++    + l++GWk F+++n+L egD++vF+l +    +++v +
  29801.m003201 114 FAKCLVRSNVKVGFWMHLPMPFCKLH-LPK-NDTVVSVETENGQEYKINYIAER----TALSGGWKAFCSSNQLHEGDVLVFHLLE--PLRFKVYI 201
                    8899*******************888.343.5579***************4444....45***********************876..44447777 PP

                    E- CS
             B3  97 fr 98 
                    +r
  29801.m003201 202 VR 203
                    66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-19106203IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-22107203IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-21112203No hitNo description
PfamPF023621.2E-14114203IPR003340B3 DNA binding domain
SMARTSM010198.6E-17114205IPR003340B3 DNA binding domain
PROSITE profilePS5086312.901114205IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MDAIKEHELE EDQPSPSPPK SSRQFTVYTY PKHKTKKRKS HIIKIKRPQI HQDSPKPSSP  60
STELVLYNNS SKSTSYKQKR VVVNEFYDNT ETKSSPTERA KELQASLDSS FPSFAKCLVR  120
SNVKVGFWMH LPMPFCKLHL PKNDTVVSVE TENGQEYKIN YIAERTALSG GWKAFCSSNQ  180
LHEGDVLVFH LLEPLRFKVY IVRGTVSAEA NAEVEKVEAP EKQTRSVCLT IKDQAEIDGK  240
NNERVKEEEE EKSLMVLDEG HGMDQPENGT EGHPDSKALE VIASSGSGFD FKDVDSIESF  300
SIVINGLAID SEISDHQRTK YYELCCSQNS FLHENLLKSI NYKLATEIII GTVNISEAIR  360
ASKLSCSNAD FAVWDKTLKG FELLGMNVGF LRSRLSRLMT LAMESEEAVE SESREVRQGQ  420
ARVNEEMQSL AFKLLELKEA RDMLDAEIES LKANAERHEH KFQEAVNAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13038PKHKTKKRK
23640KRKSH
Cis-element ? help Back to Top
SourceLink
PlantRegMap29801.m003201
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002518782.10.0B3 domain-containing protein Os01g0234100
TrEMBLB9RYJ80.0B9RYJ8_RICCO; Uncharacterized protein
STRINGXP_002518782.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-34B3 family protein