PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29801.m003200
Common NameRCOM_0813720
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 277aa    MW: 32165.4 Da    PI: 8.9481
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29801.m003200genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3536.2e-17140229198
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    f+k +++s+v+   +l lp +f+++h     ++  +tl de+g   e k+ ++k++    l++GW++F+ +++L +gD +vF+l++ +ef  +v +
  29801.m003200 140 FVKPMLQSHVTGGFWLGLPVQFCKDHLP--SRDEYITLVDENGDASETKYLVQKNG----LSGGWRGFAIDHQLVDGDALVFQLVSPKEF--KVFI 227
                    89************************42..35568***************777777....***********************9987777..6655 PP

                    E- CS
             B3  97 fr 98 
                    +r
  29801.m003200 228 IR 229
                    55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-22132231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-25134231IPR015300DNA-binding pseudobarrel domain
CDDcd100172.14E-24138229No hitNo description
PfamPF023621.6E-15140229IPR003340B3 DNA binding domain
SMARTSM010199.1E-22140232IPR003340B3 DNA binding domain
PROSITE profilePS5086311.73140231IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MVISKSKYEE IRQQRLAENK KRMEELNLKK LSDGLRTPSP RKSPMKHAKP RVPRLPAELV  60
TVRRSSRFSD KPPMALESME RPRRRVVYLI HPALRFTCRS YSYQRRDLLN RIYASDEVRA  120
YAIDRAEKLQ SDLESDFPSF VKPMLQSHVT GGFWLGLPVQ FCKDHLPSRD EYITLVDENG  180
DASETKYLVQ KNGLSGGWRG FAIDHQLVDG DALVFQLVSP KEFKVFIIRA NEDEEKENDQ  240
EDNEEKENDK EENADDLKNI DATPLDNIAK RTRASRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap29801.m003200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015574366.11e-176B3 domain-containing protein At3g19184
SwissprotQ1G3M38e-85Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLB9RYJ70.0B9RYJ7_RICCO; DNA binding protein, putative
STRINGXP_002518781.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-81B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]