PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29801.m003186
Common NameLOC8275304, RCOM_0813580
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 288aa    MW: 31569 Da    PI: 6.5127
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29801.m003186genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20145194255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+W+AeIrdp+    r +r++lg+f tae+Aa+a+++a+ +++g
  29801.m003186 145 NYRGVRQRP-WGKWAAEIRDPR----RaTRVWLGTFNTAEDAARAYDKAAIEFRG 194
                    59*******.**********82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.8E-14145194IPR001471AP2/ERF domain
SMARTSM003806.8E-40145208IPR001471AP2/ERF domain
PROSITE profilePS5103225.185145202IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23145203IPR016177DNA-binding domain
CDDcd000182.38E-34145202No hitNo description
Gene3DG3DSA:3.30.730.103.4E-33145202IPR001471AP2/ERF domain
PRINTSPR003675.0E-12146157IPR001471AP2/ERF domain
PRINTSPR003675.0E-12168184IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MQRSSKRQKC TGTATPATTT DLLSPAATAV LPQQQRLTQE QEFAIMVAAL GNVLSGSASS  60
STAMASDFSQ ELFHLSFPSS NSQFATSGTA AAATAINPIL PPLDLDTCNV CKIRGCLGCN  120
FFPPNQEESS NGNNKKGTRK RGKKNYRGVR QRPWGKWAAE IRDPRRATRV WLGTFNTAED  180
AARAYDKAAI EFRGPRAKLN FPFPDNTSNN HLEDQSHHHQ QQHMQEQNVI MDGKRSEFEE  240
AAAGQENEFL GIEAIGEDEI QQWMMMMDFN NGDSSDSAGT ATTATLGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-23144203161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-23144207468ATERF1
3gcc_A1e-23144207468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29801.m003186
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002518767.10.0ethylene-responsive transcription factor ERF109
SwissprotQ9SZ069e-42EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLB9RYI30.0B9RYI3_RICCO; Uncharacterized protein
STRINGXP_002518767.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-31redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]