PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29801.m003096 | ||||||||
Common Name | LOC8288116, RCOM_0811370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | MYB | ||||||||
Protein Properties | Length: 245aa MW: 27414.6 Da PI: 6.8847 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.8 | 6.7e-20 | 11 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ll+++v+++G ++W++I++ ++ gR++k+c++rw + 29801.m003096 11 KGPWSPEEDLLLKKLVQRHGARNWTLISKSIP-GRSGKSCRLRWCNQ 56 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.2 | 3.3e-17 | 65 | 107 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ +eEde++vda+ ++G++ W++Iar ++ gRt++ +k++w++ 29801.m003096 65 PFAPEEDEIIVDAHSRFGNK-WAAIARLLN-GRTDNAIKNHWNST 107 6779****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.796 | 6 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.36E-32 | 8 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-17 | 10 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.5E-20 | 11 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 12 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.81E-15 | 13 | 55 | No hit | No description |
SMART | SM00717 | 8.9E-14 | 62 | 110 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.966 | 63 | 112 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.8E-14 | 65 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.75E-10 | 65 | 108 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.4E-23 | 65 | 111 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MDSESAFDRV KGPWSPEEDL LLKKLVQRHG ARNWTLISKS IPGRSGKSCR LRWCNQLSPE 60 VEHRPFAPEE DEIIVDAHSR FGNKWAAIAR LLNGRTDNAI KNHWNSTLKR KYGAAFNNDD 120 GDRLQEKERD KKALSFRSSS SLSSGSDVSD TELPVTSSSL QQLGTTHDRV QSAAYHDDDD 180 DGPSTELTLS FPGKGCIELS AGAKELTFSI EEHTEKNALL APKLIATIQE MIKTEVKNYM 240 KANMR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-39 | 10 | 111 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-39 | 10 | 111 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 3e-39 | 10 | 111 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29801.m003096 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002518677.1 | 0.0 | transcription factor MYB77 | ||||
Swissprot | O23160 | 4e-65 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | B9RY93 | 0.0 | B9RY93_RICCO; R2r3-myb transcription factor, putative | ||||
STRING | XP_002518677.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF843 | 34 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 6e-65 | myb domain protein 73 |
Link Out ? help Back to Top | |
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Phytozome | 29801.m003096 |
Entrez Gene | 8288116 |
Publications ? help Back to Top | |||
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