PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29785.m000944

Common Name

LOC8268779, RCOM_0784710

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

NF-YC

Protein Properties

Length: 288aa MW: 32215.8 Da PI: 4.7836

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29785.m000944	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	57.1	4e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++ad+dv +i+ +P l+ska elf+ +l r++ + +tl+ ++++v +ifdfl +iv + 29785.m000944 6 DTRFPAARIKKIMQADDDVGKIALAVPLLVSKALELFLQDLCDRTYAITLRRGAKTLNSLHLKQCVHTFNIFDFLGEIVGK 86 5789***********************************************************************999865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.0E-25	2	72	IPR009072	Histone-fold
SuperFamily	SSF47113	6.01E-18	3	86	IPR009072	Histone-fold
Pfam	PF00808	3.8E-18	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MKKKLDTRFP AARIKKIMQA DDDVGKIALA VPLLVSKALE LFLQDLCDRT YAITLRRGAK 60 TLNSLHLKQC VHTFNIFDFL GEIVGKVPDL GGSGAAGDDC TVAKRRKVAD DEDNDSDAEY 120 NRSIMHEVTH TSTSGRGRGR GRVRGRSRGR DCRRGSRATK GERAAQHEEF EDEVDISHDD 180 DNLSPIIERL DNLDEPEDFK GDIPASKSTQ MPIHDFDLNV DLDENGQSKT LFSAGPISSS 240 AKSIPEMKHE ELSSWSLADS EKMDIDPIHL AYLNRRIDEA EEDYDEED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	4e-22	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	149	RGRVRGRSRGR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29785.m000944

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002523220.1	0.0	dr1-associated corepressor
TrEMBL	B9SB51	0.0	B9SB51_RICCO; Negative cofactor 2 transcriptional co-repressor, putative
STRING	XP_002523220.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	3e-62	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	29785.m000944
Entrez Gene	8268779