PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29780.m001368
Common NameLOC8283312, RCOM_0775800
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family G2-like
Protein Properties Length: 298aa    MW: 33192.3 Da    PI: 7.7286
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29780.m001368genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.53e-331972255
        G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                   prlrWtpeLH++Fv+a+e+LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+
  29780.m001368 19 PRLRWTPELHHCFVHAIERLGGQDKATPKLVLQLMDVKGLTISHVKSHLQMYRS 72
                   8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-321576IPR009057Homeodomain-like
PROSITE profilePS5129412.471575IPR017930Myb domain
SuperFamilySSF466893.58E-161774IPR009057Homeodomain-like
TIGRFAMsTIGR015576.8E-241972IPR006447Myb domain, plants
PfamPF002497.9E-92071IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGSCGRSGTV RQYVRSKVPR LRWTPELHHC FVHAIERLGG QDKATPKLVL QLMDVKGLTI  60
SHVKSHLQMY RSMRSDLGKQ DKSSTHQRRQ YFDEHDECID EVRPLAESDS HFIYSTVPSK  120
RARIETKSSI SDTNLQCSQG ICEAVTNPYA LDDYMGIKEG NGGGFRWEQT HSKPQFTPFS  180
LPHDLCNLNS FKYAVEESDF LKIPKVKYES CKPAAARMSK LEEATGSGRA EDEEANGCEL  240
LLSLSLPHPS SQRSNASSAS EISEAFSSYA RTTFKDCSGS SSAKRNINLD LSIALCGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-192074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-192074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-192074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-192074357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29780.m001368
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002521884.10.0putative Myb family transcription factor At1g14600 isoform X2
TrEMBLB9S7B50.0B9S7B5_RICCO; Uncharacterized protein
STRINGXP_002521884.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55393353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.13e-35G2-like family protein