PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29763.m000186
Common NameRCOM_0753960
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family AP2
Protein Properties Length: 385aa    MW: 41038.1 Da    PI: 7.2979
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29763.m000186genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.6e-1580131155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  29763.m000186  80 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 131
                    57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.2E-5351IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-91247IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-91346IPR001471AP2/ERF domain
CDDcd000182.13E-121347No hitNo description
PROSITE profilePS5103210.7181345IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-1880141IPR016177DNA-binding domain
PfamPF008474.4E-1080131IPR001471AP2/ERF domain
CDDcd000185.87E-2680141No hitNo description
SMARTSM003801.5E-3381145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-1881140IPR001471AP2/ERF domain
PROSITE profilePS5103219.04581139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDCTNIIIVF PTVYLGGYDK EEKAARAYDL AALKYWGPTT TTNFPISNYE KELEEMKHMT  60
RQEFVASLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE  120
AYDIAAIKFR GLNAVTNFDM SRYDVKSIAN SNLPIGGISG KPKNSQDSAS DSKSIDGGCR  180
SDDRDLSSAS SPVVTFASHQ PTTTTSALNF VMPIKQDPSD YWSNILGCHN PTAAATTSST  240
TLNSAKNTNA TTTTLAQSIL FPSAAAFPST TAFGMDLINV SSSSVNESNN NNNNNNNNVL  300
LYNGGYNLHQ HGEGGGGGGG GGGISSGSTS TSSSIPFATP VALNSTGSNY DGNSSYGSWI  360
AQSLHSLQSA KPNLSMFQTP IFGME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29763.m000186
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002531028.20.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-110AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLB9SYF90.0B9SYF9_RICCO; Transcription factor, putative
STRINGXP_002531028.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.15e-99AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]