PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29742.m001447 | ||||||||
Common Name | LOC8282129, RCOM_0719860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | MYB_related | ||||||||
Protein Properties | Length: 89aa MW: 10650.2 Da PI: 10.5257 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.1 | 4.2e-08 | 31 | 69 | 4 | 44 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++++E++++++ k+ G + W++Ia +++ gR ++++ +w 29742.m001447 31 MSEQEEDIIYRMYKLVGDR-WALIAGRVP-GRKAEEIERFW 69 79***************99.*********.*********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 9.6E-6 | 27 | 75 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.72E-5 | 30 | 69 | No hit | No description |
Pfam | PF00249 | 2.7E-7 | 31 | 70 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.73E-7 | 32 | 70 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.0E-10 | 32 | 70 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MDNRRRRKQA RTTASRCSQE VSSIEWEFIN MSEQEEDIIY RMYKLVGDRW ALIAGRVPGR 60 KAEEIERFWI MKHAEGFAGR RKELKKSNS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in epidermal cell fate specification. Negative regulator of trichome development, including endoreplication, by lateral inhibition involving intercellular interactions. Promotes the formation of hair developing cells (trichoblasts) in H position in root epidermis, probably by inhibiting non-hair cell (atrichoblasts) formation. {ECO:0000269|PubMed:10368181, ECO:0000269|PubMed:12356720}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29742.m001447 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negative autoregulation. Repressed by CPC. {ECO:0000269|PubMed:12356720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002523374.1 | 1e-59 | transcription factor TRY | ||||
Swissprot | Q8GV05 | 9e-39 | TRY_ARATH; Transcription factor TRY | ||||
TrEMBL | B9SBK5 | 3e-58 | B9SBK5_RICCO; Triptychon and cpc, putative | ||||
STRING | XP_002523374.1 | 5e-59 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3583 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53200.1 | 4e-41 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | 29742.m001447 |
Entrez Gene | 8282129 |