PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29739.m003784
Common NameLOC8281198, RCOM_0712550
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 275aa    MW: 31513.4 Da    PI: 5.8833
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29739.m003784genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-181360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEde+l +++k +G g W++++r+ g++R++k+c++rw++yl
    29739.m003784 13 RGPWSPEEDEILTNYIKHYGVGKWTSVSRRAGLKRCAKSCRLRWLNYL 60
                     89********************************************97 PP
2Myb_DNA-binding50.93.5e-1666110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
    29739.m003784  66 RGNISEDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSN 110
                      7899******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.453864IPR017930Myb domain
SuperFamilySSF466891.27E-3010107IPR009057Homeodomain-like
SMARTSM007174.5E-161262IPR001005SANT/Myb domain
PfamPF002491.8E-161360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-241467IPR009057Homeodomain-like
CDDcd001672.27E-121560No hitNo description
PROSITE profilePS5129419.6865115IPR017930Myb domain
SMARTSM007174.1E-1665113IPR001005SANT/Myb domain
PfamPF002491.1E-1466110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2468114IPR009057Homeodomain-like
CDDcd001671.43E-1170111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGRQQRLDEG MNRGPWSPEE DEILTNYIKH YGVGKWTSVS RRAGLKRCAK SCRLRWLNYL  60
RPNIKRGNIS EDEEDLIIRL HKLLGNRWSL IAGRLPGRTD NEIKNYWNSN LKKKFEHKKS  120
TQLRSTKHLQ HPSQESKAPE TSTQELLAKT IENPIPLDNG HDRTTDEKLF DSSLAPEDDY  180
PLDLLMDFDL NELLSVKSTV ISNEIDGCHE TNVSAEAEDA SIDPNIMVSR GDVPTQLDVL  240
IGNTIRAEYQ SPFGPFQPYN AFDIHIFPPY LSLLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28131167109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29739.m003784
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002516298.10.0transcription factor WER
SwissprotQ9FJA21e-56TT2_ARATH; Transcription factor TT2
TrEMBLB9RRC90.0B9RRC9_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002516298.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.16e-59MYB family protein
Publications ? help Back to Top
  1. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  2. Liu C,Jun JH,Dixon RA
    MYB5 and MYB14 Play Pivotal Roles in Seed Coat Polymer Biosynthesis in Medicago truncatula.
    Plant Physiol., 2014. 165(4): p. 1424-1439
    [PMID:24948832]
  3. Zhu Z, et al.
    Characterization of the cis elements in the proximal promoter regions of the anthocyanin pathway genes reveals a common regulatory logic that governs pathway regulation.
    J. Exp. Bot., 2015. 66(13): p. 3775-89
    [PMID:25911741]
  4. Liu Y,Shi Z,Maximova SN,Payne MJ,Guiltinan MJ
    Tc-MYBPA an Arabidopsis TT2-like transcription factor and functions in the regulation of proanthocyanidin synthesis in Theobroma cacao.
    BMC Plant Biol., 2015. 15: p. 160
    [PMID:26109181]
  5. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  6. Li Y, et al.
    Two IIIf Clade-bHLHs from Freesia hybrida Play Divergent Roles in Flavonoid Biosynthesis and Trichome Formation when Ectopically Expressed in Arabidopsis.
    Sci Rep, 2016. 6: p. 30514
    [PMID:27465838]
  7. Li C,Zhang B,Chen B,Ji L,Yu H
    Site-specific phosphorylation of TRANSPARENT TESTA GLABRA1 mediates carbon partitioning in Arabidopsis seeds.
    Nat Commun, 2018. 9(1): p. 571
    [PMID:29422671]