PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29736.m002045
Common NameLOC8287025, RCOM_0698700
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HD-ZIP
Protein Properties Length: 305aa    MW: 34782.5 Da    PI: 4.3296
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29736.m002045genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-1882136357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                    k++++t++q++ Le+ Fe ++++  e++ +LAk+lgL+ rqV +WFqNrRa+ k+
  29736.m002045  82 KKRRLTATQVQFLERNFEVENKLEPERKIQLAKELGLQPRQVAIWFQNRRARFKN 136
                    56689***********************************************995 PP
2HD-ZIP_I/II125.82e-4082171291
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                    kkrrl++ qv++LE++Fe e+kLeperK +la+eLglqprqva+WFqnrRAR+k+kqlEkdy++Lk++yd+lk++ ++L ke+e+L++e 
  29736.m002045  82 KKRRLTATQVQFLERNFEVENKLEPERKIQLAKELGLQPRQVAIWFQNRRARFKNKQLEKDYDSLKASYDKLKADYDNLLKENENLKNEF 171
                    9*************************************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.18E-1972139IPR009057Homeodomain-like
PROSITE profilePS5007117.11977137IPR001356Homeobox domain
SMARTSM003894.7E-1780141IPR001356Homeobox domain
PfamPF000461.1E-1582135IPR001356Homeobox domain
CDDcd000863.04E-1782138No hitNo description
Gene3DG3DSA:1.10.10.601.9E-1984145IPR009057Homeodomain-like
PRINTSPR000316.7E-6108117IPR000047Helix-turn-helix motif
PROSITE patternPS000270112135IPR017970Homeobox, conserved site
PRINTSPR000316.7E-6117133IPR000047Helix-turn-helix motif
PfamPF021831.4E-16137178IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAGDKVSDVS NVMTTVLLQN DTLPCEPVWV PASSATIHGA KSMVNFEDVG GEDTMDAPFF  60
QPLVKEENGD EDYDVFLNPP AKKRRLTATQ VQFLERNFEV ENKLEPERKI QLAKELGLQP  120
RQVAIWFQNR RARFKNKQLE KDYDSLKASY DKLKADYDNL LKENENLKNE FVSLKDKLLA  180
REKGRENFEP FHAINSVNEE PQNSIPMTVS GKDSNAPIVT PKQEDASSAK SDIFDSDSPH  240
SFLEPADSSN VFEPDQSDFS QDEEDDFGRS FLPLPCFSKL YHDPPANSCN FEFCVDDQPF  300
WSWSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137RRARFKNKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap29736.m002045
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520146.10.0homeobox-leucine zipper protein HAT5
TrEMBLB9S2C70.0B9S2C7_RICCO; Homeobox protein, putative
STRINGXP_002520146.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-40homeobox 1