PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29733.m000748
Common NameLOC8273881, RCOM_0693420
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 325aa    MW: 36991.2 Da    PI: 6.8685
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29733.m000748genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12188213126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    y   +C+++ +tG+C yGd+CkF+H+
  29733.m000748 188 YQPDICKDYKETGYCGYGDSCKFMHD 213
                    67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9186218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878187215IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7187214IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-10188213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-12188218IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.108.2E-14250312IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139203.0E-8264306No hitNo description
SuperFamilySSF578501.3E-12264309No hitNo description
CDDcd001627.85E-8265306No hitNo description
SMARTSM001843.4E-4265302IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.291265303IPR001841Zinc finger, RING-type
PROSITE patternPS005180280289IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MADSGQSEQP EPVCNFFRKP LKNKNIRKRT IEKDEEDDNS KTESSLLHNQ KKAPKPDNKL  60
YFSTGPSKNS LSAAESVVES DRPVFQFESS KEIQVQHDSR ATATLETETE FSKDARAIRE  120
RALKQAEEAL KGKTLSSGDA KLYKGIHGYT DHKAGFRREQ TISSEKAGGS HGPLRASAHI  180
RVSARFDYQP DICKDYKETG YCGYGDSCKF MHDRGDYKSG WQLEKEWDEA EKIRKRNLAL  240
GELEGGTGEN EEEDDDDEHE LPFACFICRQ PFVDPVTTKC KHYFCEHCAL KHHAKNKKCF  300
VCNQPTLGIF NTAHEIRKMM AEDHK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M4e-6498316113313RING finger protein 113A
5z58_M4e-6498316113313RING finger protein 113A
6ff4_t4e-6498316113313RING finger protein 113A
6ff7_t4e-6498316113313RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29733.m000748
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002522169.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-174C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLB9S8490.0B9S849_RICCO; RING finger protein 113A, putative
STRINGXP_002522169.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-172C3H family protein