PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29729.m002370
Common NameLOC8259556, RCOM_0689810
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 331aa    MW: 36912.5 Da    PI: 6.3191
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29729.m002370genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.36.5e-28175234258
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                    +Dgy+WrKYGqKe+ gs++prsYYrCt++   +Cp+kk+v+r ++dp ++e+tY+++H++
  29729.m002370 175 EDGYTWRKYGQKEILGSKYPRSYYRCTHQklyHCPAKKQVQRLDDDPYTFEVTYRDDHTC 234
                    7****************************9999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-27169235IPR003657WRKY domain
SuperFamilySSF1182904.71E-25171236IPR003657WRKY domain
SMARTSM007746.9E-35174236IPR003657WRKY domain
PfamPF031063.9E-25175234IPR003657WRKY domain
PROSITE profilePS5081120.771175232IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDEFISLILH GIKLAKDLEP SLRNLATQQD MLSRLDGIIR VFITAKESLR AQEPSLYHQM  60
LFRELGLQQH NQVDPSLQEQ LLRAKSMMEL FQMQGSTSLE RKQPSSSSSG GGGRMDHFVS  120
GGGLAMELGG SMDVQRGMPS SSISLQRLRR RKDEGEKRTE RVPAPRMGNT EIPPEDGYTW  180
RKYGQKEILG SKYPRSYYRC THQKLYHCPA KKQVQRLDDD PYTFEVTYRD DHTCYMSATA  240
PSIPPSQEFS QEMMPAHQPP PWLEFSLGAG GSGGSSSSTG AGPSPTTTVP EFPVADLADV  300
MFNSGSSSAN SMELIFTTSM EDKWDQGDKN N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-20175234968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29729.m002370
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520872.10.0WRKY transcription factor 55
TrEMBLB9S4F30.0B9S4F3_RICCO; Uncharacterized protein
STRINGXP_002520872.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.15e-57WRKY DNA-binding protein 55