PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29729.m002369
Common NameRCOM_0689800
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 314aa    MW: 35454.7 Da    PI: 6.2372
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29729.m002369genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.65.3e-23133192359
                    -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                    D ++WrKYGqKe+ ++++prsY+rC ++   gC+++k+v++ +edp++  +tY g+H+++
  29729.m002369 133 DAHTWRKYGQKEILNAKYPRSYFRCIHKydrGCKATKQVQKVEEDPQMYCTTYIGHHTCS 192
                    99*************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-23119192IPR003657WRKY domain
PROSITE profilePS5081119.531126189IPR003657WRKY domain
SuperFamilySSF1182904.05E-22128192IPR003657WRKY domain
SMARTSM007744.8E-32131193IPR003657WRKY domain
PfamPF031062.3E-22133191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MMGSSSSPDK LSANKERVAK ELVQGQEFAT QLQILLKKPY GENCFLTTEA HQYELLLKIL  60
ASFTQALSLV TTCDSVEVCQ NLAASPADSV CCDDRRSENS GESRRKPTAN RRGCYRRKNT  120
SLSWTTVSAA IGDAHTWRKY GQKEILNAKY PRSYFRCIHK YDRGCKATKQ VQKVEEDPQM  180
YCTTYIGHHT CSDILKYPQT ITTVSDNNPW EPSYMVIASD SKNIPTGVLD HHHHPTKQEY  240
KAETPSDLTD NLPSLDSIMW KDFVALESTE AANLRSDYTA ASSMEATCQS LDMDFVVKSI  300
DFDNDFRFDE SGIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-21125191268OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29729.m002369
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520871.20.0probable WRKY transcription factor 70
TrEMBLB9S4F20.0B9S4F2_RICCO; WRKY transcription factor, putative
STRINGXP_002520871.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-52WRKY DNA-binding protein 70