PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29729.m002330
Common NameLOC8259516, RCOM_0688810
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 318aa    MW: 35554.9 Da    PI: 6.3505
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29729.m002330genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.11.5e-27159219259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                    +Dgy+WrKYGqKe+  s++pr+YYrCt++   +Cp+kk+v+r ++dp ++e+tY+g+H+++
  29729.m002330 159 EDGYTWRKYGQKEILASNYPRGYYRCTHQklyHCPAKKQVQRLDDDPYTFEVTYRGDHTCH 219
                    7****************************9999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-27154220IPR003657WRKY domain
SuperFamilySSF1182906.41E-25155220IPR003657WRKY domain
SMARTSM007745.8E-35158220IPR003657WRKY domain
PROSITE profilePS5081120.702159221IPR003657WRKY domain
PfamPF031064.3E-25159219IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDEFISLILH GVKLAKDLEP SLQNLATQQD MLSKLDEIIR VFITARKMLN AQDSSSHHQM  60
LFRELQQQPN QVDQTIQDWL RTKSIMELFQ TQAPLLEKKS SPGGGIDIDT VPTELGGSTG  120
VQAMASSSLQ RPRRRKDDGE KRTMRVPAPR MGNTEIPPED GYTWRKYGQK EILASNYPRG  180
YYRCTHQKLY HCPAKKQVQR LDDDPYTFEV TYRGDHTCHM SSTAPSIPPP PEFSQEMMQT  240
MAAHHPPPWL EFSLGAGGSG GSSSSTGAGP STTTTTVHEF PVADLADVMF NSGSSSTNSM  300
ELIFTSMEDK WDRGDKNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-20159218968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131135PRRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29729.m002330
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520832.10.0WRKY transcription factor 55 isoform X1
TrEMBLB9S4B30.0B9S4B3_RICCO; WRKY transcription factor, putative
STRINGXP_002520832.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-64WRKY DNA-binding protein 55