PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29726.m004014
Common NameLOC8262412, RCOM_0680370
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 481aa    MW: 50870.8 Da    PI: 8.0422
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29726.m004014genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.44.2e-125074327
                   S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                   ++ C +++rtG+C yG+rC+F+H++
  29726.m004014 50 EADCIYYLRTGFCGYGSRCRFNHPR 74
                   789********************96 PP
2zf-CCCH39.59.5e-1396120327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    ++ C++++rtGtCk+G++Ck++H++
  29726.m004014  96 QPVCQYYMRTGTCKFGASCKYHHPK 120
                    689********************96 PP
3zf-CCCH34.43.8e-11141166227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++C ++ +tG+Ck+G +CkF+H++
  29726.m004014 141 GEKECTYYVKTGQCKFGVTCKFHHPQ 166
                    7899********************97 PP
4zf-CCCH39.59.7e-13301327127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +++++C+++++tG Ck+G++Ck++H+p
  29726.m004014 301 PGQPECQYYMKTGDCKFGSSCKYHHPP 327
                    5789*********************97 PP
5zf-CCCH25.32.6e-08352373627
                    -SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                    C ++ + G+Ck+G+ CkF H++
  29726.m004014 352 CTHYTQRGQCKFGPACKFDHPM 373
                    ********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.0514775IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-54774IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-64975IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-95074IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-55374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.88293121IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-793120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-696120IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-1096120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-598119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474139167IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-5139166IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-9141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6141167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-4145165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.295300328IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6300327IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-10302327IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-6304328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5306327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.633346374IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4346373IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5350376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-4352371IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-6352373IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MDRYGRTQEG SQSDPSPEWT GPGPETVLEE GDWQLGLGEV EPGYPERPEE ADCIYYLRTG  60
FCGYGSRCRF NHPRDRGAVL GAARAGAAEF PERVGQPVCQ YYMRTGTCKF GASCKYHHPK  120
QGGGSANPVS LNYYGYPLRP GEKECTYYVK TGQCKFGVTC KFHHPQPANL QIQAQSPALQ  180
VAPVPAPVPA SALYPNVQSP SVPSTQQYGL VVARPPLLPG SYVQGPYGPM LVSPGVVPYP  240
SWSPYPGPIS PVASPSTQLG VGSGVYGITQ LSPSAPAYTG GYQAMPSSSN QKEQPSFPER  300
PGQPECQYYM KTGDCKFGSS CKYHHPPELI APKTNVVLSP MGLPLRPGAP HCTHYTQRGQ  360
CKFGPACKFD HPMGSLSYSP SASSLSDMPV APYPVGSSMG TLAPSSSSSE LRPELVSGSS  420
KDSSSTRMSS SMSTTSGMVG SIFSKSGTVH HSGAQLSSQS SGLSTGSSSS SSTSIEAHTS  480
S
Cis-element ? help Back to Top
SourceLink
PlantRegMap29726.m004014
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002516892.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ84W911e-164C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLB9RT230.0B9RT23_RICCO; Nucleic acid binding protein, putative
STRINGXP_002516892.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-147C3H family protein