PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29709.m001171 | ||||||||
Common Name | RCOM_0658180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | WRKY | ||||||||
Protein Properties | Length: 185aa MW: 20927.9 Da PI: 5.293 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 35.5 | 2e-11 | 131 | 156 | 1 | 26 |
---SS-EEEEEEE--TT-SS-EEEEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYr 26 ldDgy+WrKYGqK+vk+s +p Y + 29709.m001171 131 LDDGYKWRKYGQKVVKNSLHPSVYCK 156 59*******************99977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.8E-13 | 116 | 157 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-10 | 123 | 156 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.805 | 126 | 163 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-4 | 131 | 181 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.3E-8 | 132 | 157 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MEGGEREVPN YELQVSFSTP QAIHEMGFVQ FEENQVLSFL APSHSQQSSQ ISQPLNTTTT 60 TTQIGFSTHN DQVGNLDPKA TNEDTCTASA NDGNNSWWRS SSSSEKNKVK VRRRLREPRF 120 CFQTRSDVDV LDDGYKWRKY GQKVVKNSLH PSVYCKVNAE LSEIPSPEHE VSFLFENSEN 180 SNAFA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 109 | 115 | KVRRRLR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29709.m001171 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015579263.1 | 7e-89 | probable WRKY transcription factor 12 | ||||
Swissprot | Q93WY4 | 1e-41 | WRK12_ARATH; Probable WRKY transcription factor 12 | ||||
TrEMBL | B9SKK6 | 1e-136 | B9SKK6_RICCO; Transcription factor, putative | ||||
STRING | XP_002526469.1 | 1e-137 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7294 | 32 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44745.1 | 5e-27 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | 29709.m001171 |
Publications ? help Back to Top | |||
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