PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29701.m000580 | ||||||||
Common Name | RCOM_0643050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | G2-like | ||||||||
Protein Properties | Length: 164aa MW: 18734.8 Da PI: 6.8026 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.1 | 7.2e-32 | 11 | 65 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLH+rF +av+qLGG+++AtPk il++m+++gLt++hvkSHLQkYR+ 29701.m000580 11 KERLRWTQELHDRFERAVNQLGGPDRATPKGILKAMSIPGLTIYHVKSHLQKYRI 65 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.181 | 8 | 68 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-30 | 9 | 66 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.43E-18 | 10 | 65 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-24 | 11 | 66 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.1E-9 | 13 | 64 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MGSSRTDGSG KERLRWTQEL HDRFERAVNQ LGGPDRATPK GILKAMSIPG LTIYHVKSHL 60 QKYRISKFIP ESNNKGNEES ESNSNAKELD SNSEGDRIEM QYEDDFQALK RLRTENDVLP 120 SRYKIEEINP GPYNNQNMGL QDEAKFKFSW TAMSCSSPLV PSFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-24 | 10 | 68 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-24 | 10 | 68 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-24 | 10 | 68 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-24 | 10 | 68 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-24 | 10 | 68 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-24 | 10 | 68 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-24 | 10 | 68 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-24 | 10 | 68 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29701.m000580 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015580205.1 | 1e-111 | myb family transcription factor PHL5 | ||||
Swissprot | Q9SJW0 | 1e-30 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | B9SQ15 | 1e-119 | B9SQ15_RICCO; Uncharacterized protein | ||||
STRING | XP_002528084.1 | 1e-120 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10659 | 25 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 2e-29 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | 29701.m000580 |