PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29693.m002041 | ||||||||
Common Name | LOC8264142, RCOM_0633570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 239aa MW: 26512 Da PI: 9.9072 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.5 | 3.1e-17 | 19 | 67 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien+ r +tfskRr gi KKA+EL +L++ae a +++s+ gk + + 29693.m002041 19 KKIENEDDRLITFSKRRSGIYKKASELVTLTGAELAFLVYSPAGKPFSF 67 68******************************************97776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.577 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.5E-26 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.85E-25 | 12 | 97 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-17 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.4E-21 | 20 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-17 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-17 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MAGDNQGKKT KGRQKIEMKK IENEDDRLIT FSKRRSGIYK KASELVTLTG AELAFLVYSP 60 AGKPFSFAHP SMDAITNRFF GQGSADRNNN PTTHPLIEAH RLMRIEELNQ QHNELLRQLE 120 IEKEKGKQLK QKHKKNNERK GWWDTPIEEL NVPELLQMEA ACKEIRTSLI NKLKEKTNNG 180 ASSAAAAAGG VGGVAIAGHP PTTDHYSAHM INPFASTVAI NPNNPSVFTP GFDYGHGQI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1hbx_A | 3e-14 | 2 | 68 | 1 | 67 | SERUM RESPONSE FACTOR |
1hbx_B | 3e-14 | 2 | 68 | 1 | 67 | SERUM RESPONSE FACTOR |
1hbx_D | 3e-14 | 2 | 68 | 1 | 67 | SERUM RESPONSE FACTOR |
1hbx_E | 3e-14 | 2 | 68 | 1 | 67 | SERUM RESPONSE FACTOR |
1srs_A | 3e-14 | 2 | 68 | 1 | 67 | PROTEIN (SERUM RESPONSE FACTOR (SRF)) |
1srs_B | 3e-14 | 2 | 68 | 1 | 67 | PROTEIN (SERUM RESPONSE FACTOR (SRF)) |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29693.m002041 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002519714.1 | 1e-179 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | B9S145 | 1e-178 | B9S145_RICCO; Mads box protein, putative | ||||
STRING | XP_002519714.1 | 1e-179 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 6e-36 | AGAMOUS-like 57 |
Link Out ? help Back to Top | |
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Phytozome | 29693.m002041 |
Entrez Gene | 8264142 |