PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29688.m000255

Common Name

RCOM_0624640

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

Dof

Protein Properties

Length: 284aa MW: 31499.9 Da PI: 7.9187

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29688.m000255	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.9	3e-40	17	77	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+s+ 29688.m000255 17 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRST 77 7899******************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	5	75	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.2E-34	19	75	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.646	21	75	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	23	59	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005730	Cellular Component	nucleolus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MLVCSKPHQE RKPRPQPEQA LKCPRCDSTN TKFCYYNNYS LSQPRYFCKS CRRYWTKGGT 60 LRNVPVGGGC RKNKRSTKKA QDHHQLNPHT NPLTGLPPLS YDSNDLTLAF ARLQKQSSGQ 120 LGFDDNDFSI LGNPSNAHCD IMLGNPNSIN TSASTPSFLD ALRSGFLDTQ NNNFQNLYYG 180 YGNGSIDDVE NSGGVCVSGE MMLPYDHQDV STSAATQAVT VTTMKQEFCN GREDHNSNNS 240 KVLFGFPWQI NGNGISDLDS GRESWNNHGL GNSTWHGLIN SPLM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29688.m000255

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002532252.2	0.0	dof zinc finger protein DOF2.1
TrEMBL	B9T1Y3	0.0	B9T1Y3_RICCO; Zinc finger protein, putative
STRING	XP_002532252.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5026	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	1e-51	Dof family protein

Link Out ? help Back to Top
Phytozome	29688.m000255