PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29686.m000870

Common Name

LOC8276312, RCOM_0621420

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

NF-YC

Protein Properties

Length: 315aa MW: 34492.9 Da PI: 4.9814

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29686.m000870	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.8	1.2e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl +iv r 29686.m000870 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLREIVSR 86 5789*************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.6E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	4.56E-20	4	93	IPR009072	Histone-fold
Pfam	PF00808	2.6E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMNSLHLKHC VQSYNVFDFL REIVSRVPDY GHGHGHGHSD NASDHRTLQK RKPIGEECND 120 SDEESKRSRM HEMSHAGSSG RGRGRGRGRG RGRGARSAER ESSHRDIESE PSTTLQQSAT 180 NNSNTGMVVE NDSESELLKE NMIVNDGANA PERNFDLNAE VSENDDAKAT TAAATTTTTA 240 AAATTTTAAA TTITTTSTTI MVAESSSVAP VAEPNHEEYP GWSLSEMDKM AIDPLQLAQL 300 GTRIDEEEED YDEEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	4e-20	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	152	RGRGRGRGRGR
2	144	153	RGRGRGRGRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29686.m000870

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002525554.1	0.0	dr1-associated corepressor homolog
TrEMBL	B9SHT5	0.0	B9SHT5_RICCO; Negative cofactor 2 transcriptional co-repressor, putative
STRING	XP_002525554.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-67	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	29686.m000870
Entrez Gene	8276312