PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29676.m001689
Common NameRCOM_0603690
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 494aa    MW: 56847.9 Da    PI: 8.6782
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29676.m001689genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3361.3e-112953701697
                    EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
             B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     ++p +f+++++++     ++ l  ++g  W++ l  +k+ +r+++ ++W++F +   ++e  f+vF+++g   f++ v++f
  29676.m001689 295 KMIPVQFMRDYSNV--LLNEVNLIIPNGLAWRIGL--TKSENRIYFHRNWNDFMEHYSIREEHFLVFEFIG--FFTFGVRIF 370
                    69*********877..6779***************..*******************************987..565566665 PP
2B354.12.8e-17400491298
                    EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
             B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                    fk+ +++ +l+s+  ++p +fa+e  ++   ++  +l+ ++gr+W+vk + +++ +r+ ++kGW  F ++n+Lke+D++vF+l++++ f  +v +f
  29676.m001689 400 FKIILRELNLRSHTAYVPAQFAREVLKE--APRFFKLQVPDGREWNVKAN-QRTCKRMNFGKGWIAFRRENDLKENDVCVFELIRKNVF--KVYIF 490
                    57777888899999**********9544..45579999***********4.555666889************************98888..99998 PP

                    - CS
             B3  98 r 98 
                    r
  29676.m001689 491 R 491
                    7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.166167IPR003340B3 DNA binding domain
CDDcd100175.49E-6365No hitNo description
SuperFamilySSF1019363.92E-11574IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-11976IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0041290373IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-15293375IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-8295361IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-13296375IPR015300DNA-binding pseudobarrel domain
CDDcd100178.71E-9296370No hitNo description
PROSITE profilePS5086310.348297373IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-23393492IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-22394492IPR015300DNA-binding pseudobarrel domain
CDDcd100171.55E-18398491No hitNo description
SMARTSM010194.6E-16399493IPR003340B3 DNA binding domain
PROSITE profilePS5086313.846399493IPR003340B3 DNA binding domain
PfamPF023622.3E-15400491IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MTLSEVANFV VPNGHAWKVG LSKVHNDIWF NDGWHAFVEH HSICNGYLLV FGYSGFSNFN  60
IIICDATACE IEYPCNDRGP ICSKKCLIPN EAEAEDDTSI NISSSRILSL SSSSLKSKVS  120
DASATQGESS KRPPVLGKNP GMKRSRDVAF AVSPNSKYHY ETRDKKIKME QLAELTDVDA  180
NESRRGKLDK HRLSYSHELN ELLDGKRSKV KSGEIQLEQK CEGVETITSE NLFAKYIPMG  240
FSRRDNNLKA GDVCVFELIN NNMVNEGMQK FTVDIKLLLQ NTDRFPSISF LATSKMIPVQ  300
FMRDYSNVLL NEVNLIIPNG LAWRIGLTKS ENRIYFHRNW NDFMEHYSIR EEHFLVFEFI  360
GFFTFGVRIF APSGCKAITS PENERAVDAC RKFRTERPCF KIILRELNLR SHTAYVPAQF  420
AREVLKEAPR FFKLQVPDGR EWNVKANQRT CKRMNFGKGW IAFRRENDLK ENDVCVFELI  480
RKNVFKVYIF RDKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1637649425144B3 domain-containing transcription factor VRN1
4i1k_B1e-1637649425144B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29676.m001689
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9S8R10.0B9S8R1_RICCO; Uncharacterized protein
STRINGXP_002522380.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1642569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.17e-18B3 family protein