PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29676.m001677
Common NameLOC8260564, RCOM_0603570
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 280aa    MW: 32038.7 Da    PI: 10.7481
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29676.m001677genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.24.1e-158703399
                   -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                   +   tl+d +gr W+v+l   k+ ++ ++++GWk F++ + L +gDf+vFk+d +s+f  +vk++++
  29676.m001677  8 PENATLKDHNGRIWDVQL--VKTERKLIIEEGWKAFASHHFLVDGDFLVFKFDMNSQF--FVKIYSR 70
                   45689*************..9******************************9988888..9**9987 PP
2B343.36.4e-141892682099
                    HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE-S CS
             B3  20 kkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkvfrk 99 
                    +  +++h++k   +  ++l+ esg+ W vk+++r ++gr+++ +GW  F + +++  gD++vF+++  ++ + +e  v+++rk
  29676.m001677 189 RLVVKTHNLK--LQENMKLRGESGKFWPVKVCFR-TDGRIIINNGWAAFHRKHKVAIGDTCVFEFIpaENnMVKEIQVQILRK 268
                    4556677666..4557***************765.557999***********************7654455888888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.037171IPR003340B3 DNA binding domain
PROSITE profilePS5086313.944171IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-14671IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-14872IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-12871IPR003340B3 DNA binding domain
CDDcd100173.23E-14869No hitNo description
SuperFamilySSF1019362.75E-18166266IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-18166267IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.489170269IPR003340B3 DNA binding domain
CDDcd100174.96E-13171267No hitNo description
SMARTSM010192.4E-4173269IPR003340B3 DNA binding domain
PfamPF023624.0E-11190267IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MQLNGTAPEN ATLKDHNGRI WDVQLVKTER KLIIEEGWKA FASHHFLVDG DFLVFKFDMN  60
SQFFVKIYSR NGLEKRNVLS IKDSVKEEAD TESEVENARN KSTGGCKRKY SEMESKQTQR  120
SAGRSKGTNS KLGRTKGSSG ERTSSLRQIR ATNSGISKNI KASSYIKPQK PSFEMIMTRS  180
TRYTVYVHRL VVKTHNLKLQ ENMKLRGESG KFWPVKVCFR TDGRIIINNG WAAFHRKHKV  240
AIGDTCVFEF IPAENNMVKE IQVQILRKPV NHTKKEALRA
Cis-element ? help Back to Top
SourceLink
PlantRegMap29676.m001677
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015576732.20.0LOW QUALITY PROTEIN: B3 domain-containing protein REM17-like
TrEMBLB9S8P90.0B9S8P9_RICCO; DNA binding protein, putative
STRINGXP_002522368.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143221518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.17e-26B3 family protein