PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29662.m000460 | ||||||||
Common Name | LOC8289112, RCOM_0582950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 197aa MW: 22576.9 Da PI: 8.4166 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.2 | 2.9e-18 | 81 | 135 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Le+ F+ +++++ ++ LA++l+Lt rqV vWFqNrRa+ k 29662.m000460 81 RKKLRLTKDQSALLEDSFKLHNTLNPVQKHALAHQLSLTPRQVEVWFQNRRARTK 135 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 120.7 | 7.4e-39 | 81 | 169 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k+q++lLE+sF+ +++L+p +K++la++L l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l++en+rL+ke +eL+ + 29662.m000460 81 RKKLRLTKDQSALLEDSFKLHNTLNPVQKHALAHQLSLTPRQVEVWFQNRRARTKLKQTEEDCELLKKWCESLSDENKRLKKELQELK-T 169 69*************************************************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.63E-18 | 72 | 138 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.244 | 77 | 137 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.5E-16 | 79 | 141 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.5E-15 | 81 | 135 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.57E-14 | 81 | 138 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-17 | 81 | 135 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 112 | 135 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 5.4E-14 | 137 | 177 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 3.1E-9 | 137 | 170 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MGEEDGATGL ALALSIGDHC IPKVQQNHKN KSAVTLDLSF TLCPKQEEEE EETFKLVHEA 60 EHASNKRIDF FSCNGTKNIC RKKLRLTKDQ SALLEDSFKL HNTLNPVQKH ALAHQLSLTP 120 RQVEVWFQNR RARTKLKQTE EDCELLKKWC ESLSDENKRL KKELQELKTL KPFCLHLPLC 180 STSKKAAPSE RVPPLHQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 137 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29662.m000460 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002527693.1 | 1e-142 | homeobox-leucine zipper protein HAT9 | ||||
Swissprot | P46604 | 6e-46 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | B9SNX4 | 1e-141 | B9SNX4_RICCO; Homeobox protein, putative | ||||
STRING | XP_002527693.1 | 1e-142 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5664 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 2e-37 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | 29662.m000460 |
Entrez Gene | 8289112 |
Publications ? help Back to Top | |||
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