PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 29661.m000908 | ||||||||
Common Name | LOC8283354, RCOM_0579380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 206aa MW: 22776.2 Da PI: 8.9938 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.0006 | 130 | 151 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++C+++F++ L H r+H 29661.m000908 130 ECSICHRTFPSGQALGGHKRRH 151 5*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.86E-7 | 70 | 94 | No hit | No description |
Pfam | PF13912 | 3.2E-13 | 71 | 96 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.349 | 72 | 99 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 72 | 94 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 74 | 95 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.86E-7 | 124 | 151 | No hit | No description |
Pfam | PF13912 | 7.4E-13 | 129 | 153 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.46 | 129 | 151 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.767 | 129 | 151 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 131 | 151 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 206 aa Download sequence Send to blast |
MALEALNSQS PLLHSNHDLD LHSAESWAKR RQTKRPRFEN SPTEEEYLAL CLLMLAKDTT 60 TIQDDLDHNR RYECKVCYRT FRSYQALGGH KASHHRKPIA TDNNQSVTTS SSIATSKTAN 120 SVSLSGKTRE CSICHRTFPS GQALGGHKRR HYDGGSGGGV GGSSSDGDNK GLKDVNSRNT 180 TTISQRNFDL NLPAMPEFSF IGVDRH |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 29661.m000908 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002525261.1 | 1e-154 | zinc finger protein AZF1 | ||||
Swissprot | Q9SSW1 | 2e-41 | AZF1_ARATH; Zinc finger protein AZF1 | ||||
TrEMBL | B9SGZ2 | 1e-152 | B9SGZ2_RICCO; Zinc finger protein, putative | ||||
STRING | XP_002525261.1 | 1e-153 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1327 | 32 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49930.1 | 7e-38 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 29661.m000908 |
Entrez Gene | 8283354 |
Publications ? help Back to Top | |||
---|---|---|---|
|