PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29657.m000482
Common NameRCOM_0574950
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 328aa    MW: 37017.5 Da    PI: 5.2516
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29657.m000482genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.83.5e-2281461128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykv.ePwdLpkkvkaeek....ewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                    lp G+rF+Ptdeelv  yL kk+++ +  ++e++ ++ +d+y   ePw+L  ++++++     +++fF++  kk+++++r  r + +g+W+   k 
  29657.m000482   8 LPSGCRFKPTDEELVAIYLFKKTNNLNlSDVENMvVPVCDLYGDkEPWELWDQFAQNQLfingDLFFFTEL-KKKPKSSRILRRVGKGTWHGENKG 102
                    699*********************999544445548888**97549****754434322343355666666.5567889999999******87777 PP

            NAM  90 kevlsk......kgel...vglkktLvfykgrapkgektdWvmheyrl 128
                    ++v +       k  +     +kk + +   +++++++++W++he++l
  29657.m000482 103 EPVNVLvdvgnaK--QlmiQATKKRFSYR--NQNSAHHCRWILHEFSL 146
                    7776644466431..24547788888887..6667779********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.29E-226159IPR003441NAC domain
PROSITE profilePS5100525.6468161IPR003441NAC domain
PfamPF023651.3E-159146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEQFLATLPS GCRFKPTDEE LVAIYLFKKT NNLNLSDVEN MVVPVCDLYG DKEPWELWDQ  60
FAQNQLFING DLFFFTELKK KPKSSRILRR VGKGTWHGEN KGEPVNVLVD VGNAKQLMIQ  120
ATKKRFSYRN QNSAHHCRWI LHEFSLDNVS TNWVLCRLRN NHVSDSDNSV LVLERVSSKR  180
KNAEADDQCP NTEIVPSEKR LRTSDKCTDL IARTEFDSSK ACIVVAEQDN GFVGGHDLPK  240
YGSIANADYD FENDSTYSEL SMICYGSMVP AVSNDDVESF NQGDDGSADI QTSSQPADSH  300
FASQRGRMAW ISWTAVILCC LCRVQTTG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17783LKKKPKS
Cis-element ? help Back to Top
SourceLink
PlantRegMap29657.m000482
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015581206.10.0protein ATAF2
TrEMBLB9SUU80.0B9SUU8_RICCO; Transcription factor, putative
STRINGXP_002529767.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.15e-18NAC family protein