PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29650.m000279
Common NameLOC8266288, RCOM_0565870
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family RAV
Protein Properties Length: 374aa    MW: 42781 Da    PI: 8.193
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29650.m000279genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.25.5e-105298254
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                   ++kGV    ++g W A+I+       + +r++lg+f +++eAa a++ a+ kl+
  29650.m000279 52 KFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEKEAAMAYDSAAIKLR 98
                   789996.566899****999......44**********99************98 PP
2B384.78.1e-27178283185
                    EEEE-..-HHHHTT-EE--HHH.HTT............---..............--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkke............esktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                    f+k+ltpsdv+k++rlv+pkkfa ++            +   e             +++l+++d+  + W+++++y+++s+++v+t+GW++Fvk++
  29650.m000279 178 FQKELTPSDVGKLNRLVIPKKFAVKYfpyisgngeeegE---EeeekvvgapsvlDDIELVFYDRLMKCWKFRYCYWRSSQSFVFTRGWNRFVKEK 270
                    99*****************************98776531...0357888999999899************************************** PP

                    T--TT-EEEEEE- CS
             B3  73 gLkegDfvvFkld 85 
                    +Lke+D+++F+  
  29650.m000279 271 NLKEKDIITFYAC 283
                    **********954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.00E-2351109No hitNo description
PfamPF008473.1E-55298IPR001471AP2/ERF domain
PROSITE profilePS5103217.14852107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-1652107IPR001471AP2/ERF domain
SMARTSM003802.2E-2052113IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-1552108IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.108.4E-31174286IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-25176286IPR015300DNA-binding pseudobarrel domain
CDDcd100171.37E-24177281No hitNo description
PROSITE profilePS5086310.884178305IPR003340B3 DNA binding domain
PfamPF023624.3E-24178283IPR003340B3 DNA binding domain
SMARTSM010199.3E-19178291IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MEEEASTSML SNAKNENGTA EVSDSFDSHC HPFPANKRPR LGNNIGAANL AKFKGVVPQQ  60
NGHWGAQIYA NHQRIWLGTF KSEKEAAMAY DSAAIKLRSG DSHRNFPWTD KNIPEPDFQT  120
QYSTEAILNM IRDGSYQPKF ADFLRTQSGR QEQAGASFNN QTKVPGSDHG QFSCIQLFQK  180
ELTPSDVGKL NRLVIPKKFA VKYFPYISGN GEEEGEEEEE KVVGAPSVLD DIELVFYDRL  240
MKCWKFRYCY WRSSQSFVFT RGWNRFVKEK NLKEKDIITF YACASPDNRV QEGQNFSLID  300
ISYSNGQVVV DGNNQMEEMQ KELELRLGHT IRRRLQKDDR VKEINGLKEL ESKNNNNNNK  360
MKGKGLRLFG VRID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2617729313113DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29650.m000279
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529958.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6P51e-114RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLB9SVD90.0B9SVD9_RICCO; DNA binding protein, putative
STRINGXP_002529958.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-113RAV family protein