PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29646.m001112
Common NameLOC8264235, RCOM_0554390
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family LBD
Protein Properties Length: 258aa    MW: 28775.2 Da    PI: 8.945
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29646.m001112genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260108.35.8e-3417115199
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                    aCa+Ck++r+kC +dC+l pyfpae++++f++vh++FG+snv+kl++++  e+r+++++sl++eA +r++dPv G +g ++k++ +l+  k+++ +
  29646.m001112  17 ACASCKHQRKKCGEDCILHPYFPAEKSQEFQAVHRVFGVSNVMKLIRSVGVEDRQRLAESLIWEASCRQKDPVLGPFGEYTKVSDELKLYKTHMLT 112
                    7***************************************************************************************99987766 PP

         DUF260  97 lke 99 
                    + +
  29646.m001112 113 QTH 115
                    555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.55516117IPR004883Lateral organ boundaries, LOB
PfamPF031953.0E-3317110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MQRNGNNGTA VPGTHAACAS CKHQRKKCGE DCILHPYFPA EKSQEFQAVH RVFGVSNVMK  60
LIRSVGVEDR QRLAESLIWE ASCRQKDPVL GPFGEYTKVS DELKLYKTHM LTQTHQHHQL  120
VTVANHQNQL LMPPTPPQQS MMYKPPIGWH GANGMKSAGI GRGGGGGYAY SHDNGNIDPA  180
SCTYTNFSYN NNNNVQGLDK VKKQERDVST RLVTSQQPLQ QQHHSVTNSF SEQQYYLSGQ  240
YGSINGKKMD TTLWETGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-20121116112LOB family transfactor Ramosa2.1
5ly0_B4e-20121116112LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29646.m001112
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525150.10.0protein LATERAL ORGAN BOUNDARIES
TrEMBLB9SGN10.0B9SGN1_RICCO; LOB, putative
STRINGXP_002525150.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127222534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.15e-45LOB domain-containing protein 2