PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29646.m001066 | ||||||||
Common Name | LOC8264189, RCOM_0553230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 209aa MW: 24163.6 Da PI: 8.4632 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57 | 3.4e-18 | 56 | 109 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le F ++r++ e++ +LA++lgL+ rqV vWFqNr a++k+ 29646.m001066 56 KRKLSQEQVNLLEMNFSNERKLACERKDKLASELGLDPRQVAVWFQNRTARWKH 109 5689************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 112.5 | 2.8e-36 | 55 | 145 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkr+ls+eqv+lLE++F++e+kL erK +la+eLgl+prqvavWFqnr AR+k k+lE++y++Lk+a+++++ e++rLe+ev +L+e+l 29646.m001066 55 KKRKLSQEQVNLLEMNFSNERKLACERKDKLASELGLDPRQVAVWFQNRTARWKHKKLEEEYTKLKTAHETIVLEKCRLESEVLKLNEQLC 145 9**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.11E-15 | 53 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.2E-14 | 53 | 114 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.00E-13 | 55 | 111 | No hit | No description |
PROSITE profile | PS50071 | 15.208 | 55 | 110 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.0E-15 | 56 | 109 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-17 | 57 | 117 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.3E-5 | 81 | 90 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 85 | 108 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.3E-5 | 90 | 106 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MMTATSNQKV EDHTVLLSQL YPGVYTQMVP QQGEAKPRRR RKRNKGGETG VTGVKKRKLS 60 QEQVNLLEMN FSNERKLACE RKDKLASELG LDPRQVAVWF QNRTARWKHK KLEEEYTKLK 120 TAHETIVLEK CRLESEVLKL NEQLCEANKE IQRLADRVDG VSSNNSSSMS MEALDPPFLG 180 EFGMEGYGDI FHIPENNYIH GMEWMNLFM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 38 | 56 | RRRKRNKGGETGVTGVKKR |
2 | 40 | 57 | RKRNKGGETGVTGVKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29646.m001066 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002525104.1 | 1e-156 | homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | Q9ZU70 | 2e-76 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | B9SGI5 | 1e-155 | B9SGI5_RICCO; Homeobox protein, putative | ||||
STRING | XP_002525104.1 | 1e-156 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4789 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18550.1 | 3e-53 | homeobox protein 21 |
Link Out ? help Back to Top | |
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Phytozome | 29646.m001066 |
Entrez Gene | 8264189 |
Publications ? help Back to Top | |||
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