PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29644.m000187 | ||||||||
Common Name | RCOM_0551040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | WRKY | ||||||||
Protein Properties | Length: 105aa MW: 12023.8 Da PI: 9.6161 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.9 | 4.4e-33 | 34 | 91 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+++dp+++++tYegeHnh+ 29644.m000187 34 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERASDDPSMLVVTYEGEHNHT 91 99************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 6.8E-7 | 11 | 30 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.8E-34 | 22 | 91 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.399 | 27 | 93 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-28 | 30 | 91 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-38 | 32 | 92 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-28 | 34 | 90 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MDLDFSIYYS RKLRLKRVVR IPAISLKLSD IPPDDYSWRK YGQKPIKGSP HPRGYYKCSS 60 VRGCPARKHV ERASDDPSML VVTYEGEHNH TLSVAETTNL ILESS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-24 | 20 | 92 | 2 | 73 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29644.m000187 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002533267.2 | 6e-64 | probable WRKY transcription factor 15 isoform X1 | ||||
Swissprot | O22176 | 3e-51 | WRK15_ARATH; Probable WRKY transcription factor 15 | ||||
TrEMBL | B9T4U8 | 2e-71 | B9T4U8_RICCO; Uncharacterized protein | ||||
STRING | XP_002533267.1 | 3e-72 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2177 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23320.1 | 1e-53 | WRKY DNA-binding protein 15 |
Link Out ? help Back to Top | |
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Phytozome | 29644.m000187 |
Publications ? help Back to Top | |||
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