PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29638.m000529

Common Name

RCOM_0545670

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

TCP

Protein Properties

Length: 197aa MW: 21723.6 Da PI: 8.4815

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29638.m000529	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	98.7	1.1e-30	44	110	6	66
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......s 66 ++ +++h+kv+gRdRR+Rl+a caar+F+L++eLG ++d++tieWLl+ a+p+++++tg+ + 29638.m000529 44 KPRKDRHSKVNGRDRRIRLPAVCAARIFQLTRELGNKTDGETIEWLLRVAEPSVIAATGNgisavaT 110 5789********************************************************5555542 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	25.646	46	100	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	5.0E-27	46	105	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MFIPFWTTKK DVSIHINLSS TKKQAKPNSP DSPKTSKANP VNGKPRKDRH SKVNGRDRRI 60 RLPAVCAARI FQLTRELGNK TDGETIEWLL RVAEPSVIAA TGNGISAVAT NPTANPPAPA 120 NIPFINSFTP GLPMSSFDFS GSPFMYPGEG REGLMIKSYE FPKPEQGLPP FDFDLANFDM 180 EFPVNDLFES MTGNDHD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29638.m000529

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025014927.1	1e-130	transcription factor TCP8
TrEMBL	B9STX1	1e-142	B9STX1_RICCO; Transcription factor, putative
STRING	XP_002529440.1	1e-143	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	7e-31	TCP family protein

Link Out ? help Back to Top
Phytozome	29638.m000529